C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0001OH_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000106328-ENSG00000106331 | CGP | 9606 | 7:127591409-127615928  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000004059  (ARF5)ADP-ribosylation factor 5 |
ENST00000000233 (ARF5-001)
|
127588345-127591705 | protein_coding | |
|
ENST00000415666 (ARF5-007)
|
127588403-127591088 | protein_coding | ||
|
ENST00000459680 (ARF5-004)
|
127589045-127589831 | retained_intron | ||
|
ENST00000463733 (ARF5-002)
|
127588386-127591681 | retained_intron | ||
|
ENST00000467281 (ARF5-006)
|
127588405-127589574 | processed_transcript | ||
|
ENST00000489673 (ARF5-003)
|
127588413-127591112 | retained_intron | ||
|
ENSG00000106328 (FSCN3) fascin actin-bundling protein 3, testicular |
ENST00000265825 (FSCN3-001)
|
127593635-127602144 | protein_coding | |
|
ENST00000421705 (FSCN3-003)
|
127593742-127595485 | nonsense_mediated_decay | ||
|
ENST00000469242 (FSCN3-004)
|
127595441-127596618 | retained_intron | ||
|
ENST00000478328 (FSCN3-005)
|
127591409-127595468 | processed_transcript | ||
|
ENST00000478821 (FSCN3-002)
|
127593728-127596330 | protein_coding | ||
|
ENSG00000106331 (PAX4) paired box 4 |
ENST00000338516 (PAX4-201)
|
127610811-127615928 | protein_coding | |
|
ENST00000341640 (PAX4-001)
|
127610292-127615726 | protein_coding | ||
|
ENST00000378740 (PAX4-004)
|
127610811-127615928 | protein_coding | ||
|
ENST00000463946 (PAX4-002)
|
127610938-127615670 | protein_coding | ||
|
ENST00000477423 (PAX4-005)
|
127611751-127615209 | retained_intron | ||
|
ENST00000483494 (PAX4-003)
|
127610937-127615670 | nonsense_mediated_decay | ||
|
ENST00000611453 (PAX4-202)
|
127611816-127615670 | protein_coding | ||
|
ENSG00000179562 (GCC1) GRIP and coiled-coil domain containing 1 |
ENST00000321407 (GCC1-001)
|
127580618-127585607 | protein_coding | |
|
ENST00000473728 (GCC1-003)
|
127591492-127593611 | processed_transcript | ||
|
ENST00000497650 (GCC1-002)
|
127582820-127593606 | processed_transcript | ||
| CIL_0001OH_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000029707-ENSMUSG00000029706 | CGP | 10090 | 6:28427789-28449353 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000029706 (Pax4) paired box 4 |
ENSMUST00000031718 (Pax4-001)
|
28442334-28449353 | protein_coding | |
|
ENSMUST00000164519 (Pax4-002)
|
28442334-28449251 | protein_coding | ||
|
ENSMUST00000171089 (Pax4-003)
|
28442339-28449251 | protein_coding | ||
|
ENSMUST00000174036 (Pax4-004)
|
28444673-28447180 | retained_intron | ||
|
ENSMUST00000174194 (Pax4-006)
|
28442375-28447180 | protein_coding | ||
|
ENSMUST00000174423 (Pax4-005)
|
28443804-28446864 | retained_intron | ||
|
ENSMUSG00000029707 (Fscn3) fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus) |
ENSMUST00000031719 (Fscn3-001)
|
28427789-28438622 | protein_coding | |
|
ENSMUST00000147036 (Fscn3-002)
|
28433964-28435561 | processed_transcript | ||
|
ENSMUSG00000029708 (Gcc1) golgi coiled coil 1 |
ENSMUST00000064377 (Gcc1-001)
|
28417829-28428390 | protein_coding | |
|
ENSMUST00000090511 (Gcc1-002)
|
28416091-28421724 | protein_coding | ||
|
ENSMUST00000165455 (Gcc1-004)
|
28419662-28420858 | protein_coding | ||
|
ENSMUST00000170767 (Gcc1-003)
|
28421280-28424153 | protein_coding | ||
Expression Patterns
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