C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: paired box 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000483494 PAX4-003 ENSG00000106331 9606 - 7:127610937-127615670 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000483494
Transcript ID Testis
ENST00000483494 0.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0001 VISTA 7:127234332-127837492
CIL_0001OH CIL_0001OH_0001 CGP 7:127591409-127615928
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174423 Pax4-005 retained_intron Mus_musculus 0 813
ENSMUST00000031718 Pax4-001 protein_coding Mus_musculus 0 675
ENSMUST00000171089 Pax4-003 protein_coding Mus_musculus 0 628
ENSMUST00000164519 Pax4-002 protein_coding Mus_musculus 0 628
ENSMUST00000174036 Pax4-004 retained_intron Mus_musculus 0 309
ENSMUST00000174194 Pax4-006 protein_coding Mus_musculus 0 309

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