C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication protein A3, 14kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000106399 RPA3 9606 - 7:7636518-7718607 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000223129 RPA3-001 7636518-7718607 protein_coding
  ENST00000396682 RPA3-003 7636932-7640972 protein_coding
  ENST00000401447 RPA3-006 7636975-7640026 protein_coding
  ENST00000406109 RPA3-004 7636927-7640816 protein_coding
  ENST00000462723 RPA3-007 7638414-7640577 retained_intron
  ENST00000463632 RPA3-008 7638579-7640949 retained_intron
  ENST00000483031 RPA3-002 7636985-7638406 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000223129ENST00000396682ENST00000406109ENST00000483031
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000223129 N/A N/A N/A N/A N/A 2.856±0.00 N/A 2.428±0.00 N/A 4.700±0.66 1.943±0.00 N/A
ENST00000396682 6.307±0.00 14.046±0.00 12.333±0.00 5.603±0.00 5.176±0.00 11.811±1.82 13.353±0.00 9.505±0.00 N/A 12.115±2.26 8.134±0.96 22.243±0.00
ENST00000406109 9.033±0.00 16.852±0.00 N/A 8.366±0.00 7.819±0.00 14.577±0.00 N/A N/A 8.155±0.00 N/A 11.310±1.03 N/A
ENST00000483031 N/A N/A N/A N/A N/A N/A N/A N/A 2.176±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V4 CIL_0002V4_0001 CGP 7:7566872-7718607
CIL_0002V7 CIL_0002V7_0001 CGP 7:7636518-8004059

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0000718 TAS nucleotide-excision repair, DNA damage removal
GO:0000722 TAS telomere maintenance via recombination
GO:0000723 TAS telomere maintenance
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000730 TAS DNA recombinase assembly
GO:0003677 IEA DNA binding
GO:0003684 IDA damaged DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005662 IDA DNA replication factor A complex
GO:0006260 IEA:IMP DNA replication
GO:0006271 TAS DNA strand elongation involved in DNA replication
GO:0006281 IEA:TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006284 IDA base-excision repair
GO:0006289 IMP nucleotide-excision repair
GO:0006297 TAS nucleotide-excision repair, DNA gap filling
GO:0006298 IMP mismatch repair
GO:0006302 TAS double-strand break repair
GO:0006310 IEA DNA recombination
GO:0007346 IEA regulation of mitotic cell cycle
GO:0032201 TAS telomere maintenance via semi-conservative replication
GO:0042127 IEA regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002613 rpa3 replication protein A3 protein_coding Danio_rerio
ENSMUSG00000012483 Rpa3 replication protein A3 protein_coding Mus_musculus

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