C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002V4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164654-ENSG00000106399 CGP 9606 7:7566872-7718607
GeneTranscriptPositionBiotype
ENSG00000106399 (RPA3)
replication protein A3, 14kDa 		ENST00000223129 (RPA3-001) 7636518-7718607 protein_coding
ENST00000396682 (RPA3-003) 7636932-7640972 protein_coding
ENST00000401447 (RPA3-006) 7636975-7640026 protein_coding
ENST00000406109 (RPA3-004) 7636927-7640816 protein_coding
ENST00000462723 (RPA3-007) 7638414-7640577 retained_intron
ENST00000463632 (RPA3-008) 7638579-7640949 retained_intron
ENST00000483031 (RPA3-002) 7636985-7638406 retained_intron
ENSG00000164654 (MIOS)
missing oocyte, meiosis regulator, homolog (Drosophila) 		ENST00000340080 (MIOS-001) 7566872-7607496 protein_coding
ENST00000405785 (MIOS-002) 7566875-7607223 protein_coding
ENST00000433056 (MIOS-008) 7567053-7572667 protein_coding
ENST00000433635 (MIOS-006) 7566961-7572925 protein_coding
ENST00000445169 (MIOS-009) 7567483-7572667 protein_coding
ENST00000456533 (MIOS-005) 7566988-7573013 protein_coding
ENST00000461907 (MIOS-007) 7581729-7583372 processed_transcript
ENST00000479694 (MIOS-004) 7605118-7608929 retained_intron
ENST00000493227 (MIOS-003) 7582954-7608925 retained_intron
ENSG00000219545 (RPA3OS)
UBAP1-MVB12-associated (UMA) domain containing 1 		ENST00000406829 (RPA3OS-001) 7772361-7879223 protein_coding
ENST00000463725 (RPA3OS-003) 7640752-7877443 processed_transcript
ENST00000468567 (RPA3OS-005) 7640763-8004059 processed_transcript
ENST00000469183 (RPA3OS-002) 7640752-8004053 processed_transcript
ENST00000471760 (RPA3OS-006) 7640784-7692508 processed_transcript
ENST00000482067 (RPA3OS-007) 7640794-7968020 processed_transcript
ENST00000493246 (RPA3OS-004) 7640711-7738822 processed_transcript
ENSG00000272745 (RP5-1007H16.1)
 ENST00000609858 (RP5-1007H16.1-001) 7619872-7620543 lincRNA
CIL_0002V4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042447-ENSMUSG00000012483 CGP 10090 6:8209222-8259173
GeneTranscriptPositionBiotype
ENSMUSG00000012483 (Rpa3)
replication protein A3 		ENSMUST00000012627 (Rpa3-001) 8255936-8259173 protein_coding
ENSMUST00000159594 (Rpa3-002) 8257221-8259140 retained_intron
ENSMUSG00000042447 (Mios)
missing oocyte, meiosis regulator, homolog (Drosophila) 		ENSMUST00000040017 (Mios-001) 8209222-8236274 protein_coding
ENSMUST00000160265 (Mios-002) 8226635-8236268 retained_intron
ENSMUST00000161134 (Mios-003) 8229505-8236268 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V4_0001ENSG00000106399ENST00000223129ENST00000396682ENST00000401447ENST00000406109ENST00000462723ENST00000463632ENST00000483031ENSG00000164654ENST00000340080ENST00000405785ENST00000433056ENST00000433635ENST00000445169ENST00000456533ENST00000461907ENST00000479694ENST00000493227ENSG00000219545ENST00000406829ENST00000463725ENST00000468567ENST00000469183ENST00000471760ENST00000482067ENST00000493246ENSG00000272745ENST00000609858CIL_0002V4_0002ENSMUSG00000012483ENSMUST00000012627ENSMUST00000159594ENSMUSG00000042447ENSMUST00000040017ENSMUST00000160265ENSMUST00000161134
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002V4_0001ENSG00000106399ENST00000223129ENST00000396682ENST00000406109ENST00000483031ENSG00000164654ENST00000340080ENST00000405785ENST00000493227ENSG00000219545ENST00000406829ENST00000469183ENSG00000272745ENST00000609858CIL_0002V4_0002ENSMUSG00000012483ENSMUST00000012627ENSMUST00000159594ENSMUSG00000042447ENSMUST00000040017ENSMUST00000161134
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106399 ENST00000223129 N/A N/A N/A N/A N/A N/A N/A 2.856±0.00 N/A 2.428±0.00 N/A 4.700±0.66 1.943±0.00 N/A
ENST00000396682 6.307±0.00 14.046±0.00 N/A 12.333±0.00 N/A 5.603±0.00 5.176±0.00 11.811±1.82 13.353±0.00 9.505±0.00 N/A 12.115±2.26 8.134±0.96 22.243±0.00
ENST00000401447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406109 9.033±0.00 16.852±0.00 N/A N/A N/A 8.366±0.00 7.819±0.00 14.577±0.00 N/A N/A 8.155±0.00 N/A 11.310±1.03 N/A
ENST00000462723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.176±0.00 N/A N/A N/A
ENSG00000164654 ENST00000340080 1.048±0.00 1.179±0.00 N/A 1.080±0.70 0.775±0.00 1.377±0.46 2.641±0.00 1.508±0.28 1.641±0.00 1.054±0.00 8.192±7.07 2.535±0.29 1.502±0.29 3.948±0.00
ENST00000405785 2.291±0.00 2.528±0.00 N/A 1.764±0.15 3.472±0.20 1.933±0.77 2.612±0.00 2.361±0.85 0.761±0.00 1.810±0.46 4.250±3.93 4.229±3.23 2.695±2.70 15.557±8.05
ENST00000433056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456533 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479694 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493227 N/A 0.703±0.00 0.599±0.00 0.630±0.00 0.871±0.00 N/A N/A 0.800±0.34 0.606±0.00 N/A N/A 1.372±0.28 N/A N/A
ENSG00000219545 ENST00000406829 2.279±0.00 3.163±0.00 2.077±0.00 N/A 4.095±0.00 2.546±0.00 2.861±0.00 6.405±0.00 2.562±1.00 3.336±0.00 0.569±0.00 4.240±0.84 3.131±0.82 3.520±0.00
ENST00000463725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.355±0.00 N/A N/A
ENST00000471760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272745 ENST00000609858 N/A 0.011±0.00 0.120±0.00 0.187±0.00 N/A N/A 0.032±0.00 0.194±0.00 0.045±0.00 0.056±0.00 N/A 0.031±0.01 N/A 0.062±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000012483 ENSMUST00000012627 2.969±0.88 0.424±0.13 12.247±2.09 13.379±4.32 1.366±0.90 1.427±1.00 2.686±0.39 2.212±0.58 23.211±25.42 2.112±0.59 3.755±0.77 11.344±10.89 41.138±25.71 2.221±1.24
ENSMUST00000159594 N/A 0.784±0.00 N/A 2.953±0.00 N/A 1.009±0.31 N/A 0.408±0.00 N/A N/A 0.537±0.18 1.621±0.82 N/A 0.281±0.01
ENSMUSG00000042447 ENSMUST00000040017 2.408±0.56 5.092±1.00 3.697±0.08 4.778±0.72 3.925±1.53 3.441±0.47 2.109±0.18 2.544±0.72 2.788±1.60 3.567±1.11 3.950±0.49 3.877±1.69 5.599±2.36 9.964±9.56
ENSMUST00000160265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161134 N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A N/A 0.446±0.00 N/A 0.854±0.23 N/A N/A

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