C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: replication protein A3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000012483 Rpa3 10090 - 6:8255936-8259173 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000012627 Rpa3-001 8255936-8259173 protein_coding
  ENSMUST00000159594 Rpa3-002 8257221-8259140 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000012627ENSMUST00000159594
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000012627 2.969±0.88 0.424±0.13 12.247±2.09 13.379±4.32 1.366±0.90 1.427±1.00 2.686±0.39 2.212±0.58 23.211±25.42 2.112±0.59 3.755±0.77 11.344±10.89 41.138±25.71 2.221±1.24
ENSMUST00000159594 N/A 0.784±0.00 N/A 2.953±0.00 N/A 1.009±0.31 N/A 0.408±0.00 N/A N/A 0.537±0.18 1.621±0.82 N/A 0.281±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V4 CIL_0002V4_0002 CGP 6:8209222-8259173
CIL_0002V7 CIL_0002V7_0002 CGP 6:8255936-8597480

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0003684 IEA damaged DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005654 TAS nucleoplasm
GO:0005662 IEA DNA replication factor A complex
GO:0006284 IEA base-excision repair
GO:0006289 IEA nucleotide-excision repair
GO:0006298 IEA mismatch repair
GO:0007346 IMP regulation of mitotic cell cycle
GO:0042127 IMP regulation of cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002613 rpa3 replication protein A3 protein_coding Danio_rerio
ENSG00000106399 RPA3 replication protein A3, 14kDa protein_coding Homo_sapiens

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