C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: multiple PDZ domain protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107186 MPDZ 9606 - 9:13105704-13279590 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319198 MPDZ-005 13106498-13175892 retained_intron
  ENST00000319217 MPDZ-001 13105704-13279590 protein_coding
  ENST00000381017 MPDZ-006 13105706-13120650 retained_intron
  ENST00000381022 MPDZ-201 13105712-13279564 protein_coding
  ENST00000433359 MPDZ-015 13138048-13165507 protein_coding
  ENST00000437441 MPDZ-020 13115321-13123271 nonsense_mediated_decay
  ENST00000438511 MPDZ-003 13106498-13136181 protein_coding
  ENST00000447879 MPDZ-009 13106860-13250358 protein_coding
  ENST00000494251 MPDZ-008 13205920-13219698 nonsense_mediated_decay
  ENST00000535169 MPDZ-019 13125216-13140070 nonsense_mediated_decay
  ENST00000536827 MPDZ-010 13106859-13250358 protein_coding
  ENST00000538841 MPDZ-014 13106742-13165469 protein_coding
  ENST00000539508 MPDZ-013 13106491-13190177 retained_intron
  ENST00000540202 MPDZ-018 13136156-13140943 processed_transcript
  ENST00000541718 MPDZ-002 13105710-13279564 protein_coding
  ENST00000542239 MPDZ-016 13143485-13165458 protein_coding
  ENST00000542806 MPDZ-017 13106931-13140045 nonsense_mediated_decay
  ENST00000545857 MPDZ-007 13106572-13175824 protein_coding
  ENST00000546205 MPDZ-011 13106943-13279407 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319198ENST00000319217ENST00000381022ENST00000433359ENST00000438511ENST00000447879ENST00000536827ENST00000538841ENST00000539508ENST00000541718ENST00000545857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.544±0.00 N/A N/A N/A
ENST00000319217 N/A N/A N/A 1.548±0.00 N/A N/A 2.710±1.14 N/A 2.134±0.00 N/A 1.112±0.00 N/A 0.681±0.00 N/A
ENST00000381022 6.172±0.00 2.977±0.00 N/A 3.474±1.96 2.328±0.79 6.778±0.00 4.459±0.00 2.724±0.00 0.814±0.00 2.235±0.20 N/A 2.884±1.92 2.197±0.16 5.378±0.00
ENST00000433359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.958±0.00 N/A
ENST00000438511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.383±0.00 N/A N/A
ENST00000447879 N/A N/A 2.243±0.00 1.860±0.00 4.312±0.00 N/A 1.584±0.00 N/A 4.326±0.00 2.039±0.89 1.336±0.14 1.351±0.00 N/A 1.632±0.00
ENST00000536827 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.086±0.00 N/A 0.167±0.00 1.887±0.00 N/A
ENST00000538841 N/A N/A N/A 4.254±0.00 N/A N/A N/A N/A N/A N/A N/A 0.614±0.00 N/A 3.708±0.00
ENST00000539508 N/A N/A N/A N/A N/A 0.601±0.00 N/A N/A 2.021±0.00 1.250±0.00 N/A N/A N/A N/A
ENST00000541718 N/A N/A N/A N/A N/A N/A 2.664±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000545857 4.366±0.00 N/A N/A N/A N/A N/A 2.602±0.00 12.364±0.00 N/A N/A N/A 9.496±0.00 2.140±0.33 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000145 CIL_000145_0001 CGP 9:12775021-13279590
CIL_0009AW CIL_0009AW_0001 VISTA 9:13014076-13615964
CIL_000746 CIL_000746_0001 CGP 9:13105704-14398983

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005923 IEA tight junction
GO:0007155 IEA cell adhesion
GO:0008022 IPI protein C-terminus binding
GO:0016032 IEA viral process
GO:0016324 IEA apical plasma membrane
GO:0016327 IDA apicolateral plasma membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0042552 IEA myelination
GO:0043005 IEA neuron projection
GO:0043220 IEA Schmidt-Lanterman incisure
GO:0045211 IEA postsynaptic membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000028402 Mpdz multiple PDZ domain protein protein_coding Mus_musculus

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