C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GLIS family zinc finger 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107249 GLIS3 9606 - 9:3824127-4348392 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000324333 GLIS3-003 3824127-4152183 protein_coding
  ENST00000381971 GLIS3-008 3827698-4299916 protein_coding
  ENST00000461870 GLIS3-019 3825255-3975199 processed_transcript
  ENST00000462164 GLIS3-017 4118745-4145193 protein_coding
  ENST00000463680 GLIS3-020 3898254-3937189 retained_intron
  ENST00000464391 GLIS3-007 3932360-4081361 processed_transcript
  ENST00000465708 GLIS3-009 4285539-4299916 retained_intron
  ENST00000467497 GLIS3-005 3855437-4118017 retained_intron
  ENST00000469833 GLIS3-018 3937094-4035998 processed_transcript
  ENST00000471664 GLIS3-021 4285539-4348392 processed_transcript
  ENST00000473846 GLIS3-016 4118745-4145193 processed_transcript
  ENST00000477901 GLIS3-010 4118745-4299916 protein_coding
  ENST00000478315 GLIS3-015 4118745-4147644 protein_coding
  ENST00000478844 GLIS3-012 4118745-4298496 protein_coding
  ENST00000481827 GLIS3-013 4118745-4298496 protein_coding
  ENST00000490709 GLIS3-001 4118530-4299836 processed_transcript
  ENST00000491889 GLIS3-011 4118745-4299594 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000324333ENST00000461870ENST00000465708ENST00000467497ENST00000481827ENST00000490709
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000324333 0.894±0.00 0.492±0.07 N/A 0.227±0.13 0.132±0.00 0.983±0.84 0.225±0.10 N/A N/A 1.367±0.88 0.275±0.00 0.984±0.00
ENST00000461870 N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.02 N/A N/A N/A
ENST00000465708 N/A N/A N/A 1.087±0.00 N/A N/A N/A 1.235±0.00 N/A N/A N/A N/A
ENST00000467497 N/A N/A N/A 0.471±0.00 N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481827 N/A N/A 1.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490709 N/A 2.690±0.00 N/A N/A N/A N/A N/A N/A 3.547±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NI CIL_0000NI_0001 CGP 9:3824127-4587469

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0005794 IDA Golgi apparatus
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069726 glis3 GLIS family zinc finger 3 protein_coding Danio_rerio
ENSMUSG00000052942 Glis3 GLIS family zinc finger 3 protein_coding Mus_musculus

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