C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107249-ENSG00000106688 CGP 9606 9:3824127-4587469
GeneTranscriptPositionBiotype
ENSG00000106688 (SLC1A1)
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 		ENST00000262352 (SLC1A1-001) 4490444-4587469 protein_coding
ENST00000422398 (SLC1A1-002) 4572335-4585557 protein_coding
ENST00000490167 (SLC1A1-003) 4559805-4564458 processed_transcript
ENSG00000107249 (GLIS3)
GLIS family zinc finger 3 		ENST00000324333 (GLIS3-003) 3824127-4152183 protein_coding
ENST00000381971 (GLIS3-008) 3827698-4299916 protein_coding
ENST00000461870 (GLIS3-019) 3825255-3975199 processed_transcript
ENST00000462164 (GLIS3-017) 4118745-4145193 protein_coding
ENST00000463680 (GLIS3-020) 3898254-3937189 retained_intron
ENST00000464391 (GLIS3-007) 3932360-4081361 processed_transcript
ENST00000465708 (GLIS3-009) 4285539-4299916 retained_intron
ENST00000467497 (GLIS3-005) 3855437-4118017 retained_intron
ENST00000469833 (GLIS3-018) 3937094-4035998 processed_transcript
ENST00000471664 (GLIS3-021) 4285539-4348392 processed_transcript
ENST00000473846 (GLIS3-016) 4118745-4145193 processed_transcript
ENST00000477901 (GLIS3-010) 4118745-4299916 protein_coding
ENST00000478315 (GLIS3-015) 4118745-4147644 protein_coding
ENST00000478844 (GLIS3-012) 4118745-4298496 protein_coding
ENST00000481827 (GLIS3-013) 4118745-4298496 protein_coding
ENST00000490709 (GLIS3-001) 4118530-4299836 processed_transcript
ENST00000491889 (GLIS3-011) 4118745-4299594 nonsense_mediated_decay
ENSG00000230001 (RP11-70J12.1)
 ENST00000457383 (RP11-70J12.1-001) 4070906-4071884 sense_intronic
CIL_0000NI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052942-ENSMUSG00000024935 CGP 10090 19:28258851-28913960
GeneTranscriptPositionBiotype
ENSMUSG00000024935 (Slc1a1)
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 		ENSMUST00000025875 (Slc1a1-001) 28835074-28913960 protein_coding
ENSMUST00000160702 (Slc1a1-003) 28893013-28911877 retained_intron
ENSMUST00000161119 (Slc1a1-002) 28835135-28905992 retained_intron
ENSMUST00000161340 (Slc1a1-005) 28835049-28879301 retained_intron
ENSMUST00000162189 (Slc1a1-004) 28895793-28912638 retained_intron
ENSMUSG00000052942 (Glis3)
GLIS family zinc finger 3 		ENSMUST00000065113 (Glis3-003) 28262364-28679666 nonsense_mediated_decay
ENSMUST00000112612 (Glis3-002) 28349573-28680077 protein_coding
ENSMUST00000159178 (Glis3-006) 28531847-28666685 protein_coding
ENSMUST00000159520 (Glis3-008) 28262347-28326006 processed_transcript
ENSMUST00000159639 (Glis3-010) 28263951-28283906 retained_intron
ENSMUST00000160376 (Glis3-004) 28531847-28678690 nonsense_mediated_decay
ENSMUST00000161026 (Glis3-007) 28262973-28540420 retained_intron
ENSMUST00000161328 (Glis3-005) 28531847-28678690 protein_coding
ENSMUST00000162022 (Glis3-001) 28258851-28680077 protein_coding
ENSMUST00000162873 (Glis3-009) 28262426-28300425 processed_transcript
ENSMUSG00000064202 (4430402I18Rik)
RIKEN cDNA 4430402I18 gene 		ENSMUST00000025872 (4430402I18Rik-001) 28923064-28964154 protein_coding
ENSMUST00000159655 (4430402I18Rik-004) 28923533-28929227 processed_transcript
ENSMUST00000160542 (4430402I18Rik-007) 28923688-28963587 protein_coding
ENSMUST00000161813 (4430402I18Rik-005) 28948731-28963908 protein_coding
ENSMUST00000162110 (4430402I18Rik-003) 28923530-28967800 protein_coding
ENSMUST00000164777 (4430402I18Rik-006) 28923688-28963587 protein_coding
ENSMUST00000175647 (4430402I18Rik-002) 28901268-28967730 nonsense_mediated_decay
ENSMUST00000179171 (4430402I18Rik-201) 28893042-28911879 protein_coding
ENSMUSG00000067351 (Rps15a-ps2)
ribosomal protein S15A, pseudogene 2 		ENSMUST00000087473 (Rps15a-ps2-001) 28742159-28742551 processed_pseudogene
ENSMUSG00000089952 (4933413C19Rik)
RIKEN cDNA 4933413C19 gene 		ENSMUST00000162380 (4933413C19Rik-001) 28580533-28583294 sense_intronic
ENSMUSG00000089993 (Gm5822)
predicted gene 5822 		ENSMUST00000161562 (Gm5822-001) 28862330-28863707 processed_pseudogene
ENSMUSG00000090737 (Gm6788)
predicted gene 6788 		ENSMUST00000166459 (Gm6788-001) 28763161-28763430 processed_pseudogene
ENSMUSG00000097735 (D930032P07Rik)
RIKEN cDNA D930032P07 gene 		ENSMUST00000181393 (D930032P07Rik-201) 28678224-28720027 lincRNA
ENSMUST00000181625 (D930032P07Rik-202) 28678228-28719752 lincRNA
ENSMUSG00000098069 (Gm26942)
predicted gene, 26942 		ENSMUST00000182854 (Gm26942-001) 28812406-28813202 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NI_0001ENSG00000106688ENST00000262352ENST00000422398ENST00000490167ENSG00000107249ENST00000324333ENST00000381971ENST00000461870ENST00000462164ENST00000463680ENST00000464391ENST00000465708ENST00000467497ENST00000469833ENST00000471664ENST00000473846ENST00000477901ENST00000478315ENST00000478844ENST00000481827ENST00000490709ENST00000491889ENSG00000230001ENST00000457383CIL_0000NI_0002ENSMUSG00000024935ENSMUST00000025875ENSMUST00000160702ENSMUST00000161119ENSMUST00000161340ENSMUST00000162189ENSMUSG00000052942ENSMUST00000065113ENSMUST00000112612ENSMUST00000159178ENSMUST00000159520ENSMUST00000159639ENSMUST00000160376ENSMUST00000161026ENSMUST00000161328ENSMUST00000162022ENSMUST00000162873ENSMUSG00000064202ENSMUST00000025872ENSMUST00000159655ENSMUST00000160542ENSMUST00000161813ENSMUST00000162110ENSMUST00000164777ENSMUST00000175647ENSMUST00000179171ENSMUSG00000067351ENSMUST00000087473ENSMUSG00000089952ENSMUST00000162380ENSMUSG00000089993ENSMUST00000161562ENSMUSG00000090737ENSMUST00000166459ENSMUSG00000097735ENSMUST00000181393ENSMUST00000181625ENSMUSG00000098069ENSMUST00000182854
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NI_0001ENSG00000106688ENST00000262352ENST00000422398ENSG00000107249ENST00000324333ENST00000461870ENST00000465708ENST00000467497ENST00000481827ENST00000490709ENSG00000230001ENST00000457383CIL_0000NI_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106688 ENST00000262352 1.809±0.00 1.620±0.00 4.456±0.00 5.063±1.42 0.685±0.09 1.177±0.02 0.296±0.17 5.466±2.34 14.859±14.05 4.092±0.52 0.329±0.25 0.974±0.40 3.172±0.73 1.452±0.00
ENST00000422398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00 N/A N/A 0.451±0.00
ENST00000490167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000107249 ENST00000324333 N/A 0.894±0.00 N/A 0.492±0.07 N/A 0.227±0.13 0.132±0.00 0.983±0.84 0.225±0.10 N/A N/A 1.367±0.88 0.275±0.00 0.984±0.00
ENST00000381971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.02 N/A N/A N/A
ENST00000462164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465708 N/A N/A N/A N/A N/A 1.087±0.00 N/A N/A N/A 1.235±0.00 N/A N/A N/A N/A
ENST00000467497 N/A N/A N/A N/A N/A 0.471±0.00 N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000469833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481827 N/A N/A N/A N/A 1.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490709 N/A N/A N/A 2.690±0.00 N/A N/A N/A N/A N/A N/A 3.547±0.00 N/A N/A N/A
ENST00000491889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230001 ENST00000457383 0.015±0.00 0.059±0.00 N/A 0.029±0.00 0.653±0.00 N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A 0.075±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024935 ENSMUST00000025875 2.719±0.98 N/A 1.054±0.00 4.776±2.68 N/A N/A 0.703±0.09 19.107±6.27 N/A 2.474±0.18 0.548±0.18 1.777±0.73 3.674±2.74 N/A
ENSMUST00000160702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161340 N/A N/A N/A N/A N/A 15.023±0.00 N/A N/A N/A N/A N/A 9.960±0.00 N/A N/A
ENSMUST00000162189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052942 ENSMUST00000065113 N/A 0.414±0.00 N/A 0.249±0.00 N/A 0.565±0.10 N/A 1.665±0.00 N/A 0.689±0.28 N/A 0.640±0.03 N/A 0.117±0.00
ENSMUST00000112612 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.02 N/A N/A N/A N/A N/A
ENSMUST00000159178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159520 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159639 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.14 N/A N/A N/A N/A N/A
ENSMUST00000160376 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161026 1.746±0.00 0.739±0.29 N/A N/A 0.452±0.13 0.771±0.10 0.123±0.04 2.918±0.71 0.038±0.01 0.943±0.21 N/A 2.343±0.35 0.213±0.09 0.180±0.09
ENSMUST00000161328 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162022 2.485±1.71 0.803±0.14 0.430±0.07 0.377±0.21 0.284±0.21 1.121±0.20 0.039±0.01 6.119±1.47 0.052±0.03 1.183±0.28 0.038±0.02 1.709±0.57 0.517±0.32 0.220±0.06
ENSMUST00000162873 1.219±0.08 N/A N/A N/A 1.408±0.57 N/A N/A N/A 0.070±0.03 N/A 0.068±0.03 N/A N/A N/A
ENSMUSG00000064202 ENSMUST00000025872 N/A N/A N/A N/A N/A N/A 1.845±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159655 N/A N/A N/A N/A N/A N/A N/A N/A 4.491±0.00 N/A N/A N/A N/A 113.843±0.00
ENSMUST00000160542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161813 N/A N/A N/A N/A N/A N/A 13.929±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162110 N/A N/A N/A N/A N/A N/A 2.334±0.60 N/A N/A N/A 0.764±0.00 N/A N/A 97.875±30.77
ENSMUST00000164777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A
ENSMUST00000175647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179171 4.545±1.84 N/A N/A 7.560±6.55 N/A 12.257±2.26 N/A 30.141±5.74 N/A 5.249±0.93 0.508±0.08 6.064±2.09 5.252±3.25 N/A
ENSMUSG00000067351 ENSMUST00000087473 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000089952 ENSMUST00000162380 0.125±0.11 0.074±0.02 0.023±0.01 0.047±0.03 0.039±0.02 0.054±0.02 0.021±0.01 0.268±0.15 0.008±0.00 0.369±0.09 N/A 0.070±0.05 0.020±0.00 0.502±0.00
ENSMUSG00000089993 ENSMUST00000161562 0.128±0.12 N/A 0.169±0.06 0.164±0.06 0.246±0.23 0.134±0.06 0.048±0.02 0.455±0.06 0.072±0.03 0.140±0.06 0.045±0.02 0.309±0.25 0.528±0.37 0.058±0.01
ENSMUSG00000090737 ENSMUST00000166459 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A
ENSMUSG00000097735 ENSMUST00000181393 N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A 0.005±0.00 0.083±0.07
ENSMUST00000181625 N/A 0.106±0.00 N/A 0.036±0.02 0.096±0.06 N/A 0.028±0.00 0.081±0.01 N/A N/A N/A 0.018±0.00 0.040±0.01 0.136±0.07
ENSMUSG00000098069 ENSMUST00000182854 N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A 0.060±0.00 N/A 0.042±0.00 N/A 0.107±0.00

Loading