C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000NI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107249-ENSG00000106688 CGP 9606 9:3824127-4587469
GeneTranscriptPositionBiotype
ENSG00000106688 (SLC1A1)
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 		ENST00000262352 (SLC1A1-001) 4490444-4587469 protein_coding
ENST00000422398 (SLC1A1-002) 4572335-4585557 protein_coding
ENST00000490167 (SLC1A1-003) 4559805-4564458 processed_transcript
ENSG00000107249 (GLIS3)
GLIS family zinc finger 3 		ENST00000324333 (GLIS3-003) 3824127-4152183 protein_coding
ENST00000381971 (GLIS3-008) 3827698-4299916 protein_coding
ENST00000461870 (GLIS3-019) 3825255-3975199 processed_transcript
ENST00000462164 (GLIS3-017) 4118745-4145193 protein_coding
ENST00000463680 (GLIS3-020) 3898254-3937189 retained_intron
ENST00000464391 (GLIS3-007) 3932360-4081361 processed_transcript
ENST00000465708 (GLIS3-009) 4285539-4299916 retained_intron
ENST00000467497 (GLIS3-005) 3855437-4118017 retained_intron
ENST00000469833 (GLIS3-018) 3937094-4035998 processed_transcript
ENST00000471664 (GLIS3-021) 4285539-4348392 processed_transcript
ENST00000473846 (GLIS3-016) 4118745-4145193 processed_transcript
ENST00000477901 (GLIS3-010) 4118745-4299916 protein_coding
ENST00000478315 (GLIS3-015) 4118745-4147644 protein_coding
ENST00000478844 (GLIS3-012) 4118745-4298496 protein_coding
ENST00000481827 (GLIS3-013) 4118745-4298496 protein_coding
ENST00000490709 (GLIS3-001) 4118530-4299836 processed_transcript
ENST00000491889 (GLIS3-011) 4118745-4299594 nonsense_mediated_decay
ENSG00000230001 (RP11-70J12.1)
 ENST00000457383 (RP11-70J12.1-001) 4070906-4071884 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0000NI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052942-ENSMUSG00000024935 CGP 10090 19:28258851-28913960
GeneTranscriptPositionBiotype
ENSMUSG00000024935 (Slc1a1)
solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 		ENSMUST00000025875 (Slc1a1-001) 28835074-28913960 protein_coding
ENSMUST00000160702 (Slc1a1-003) 28893013-28911877 retained_intron
ENSMUST00000161119 (Slc1a1-002) 28835135-28905992 retained_intron
ENSMUST00000161340 (Slc1a1-005) 28835049-28879301 retained_intron
ENSMUST00000162189 (Slc1a1-004) 28895793-28912638 retained_intron
ENSMUSG00000052942 (Glis3)
GLIS family zinc finger 3 		ENSMUST00000065113 (Glis3-003) 28262364-28679666 nonsense_mediated_decay
ENSMUST00000112612 (Glis3-002) 28349573-28680077 protein_coding
ENSMUST00000159178 (Glis3-006) 28531847-28666685 protein_coding
ENSMUST00000159520 (Glis3-008) 28262347-28326006 processed_transcript
ENSMUST00000159639 (Glis3-010) 28263951-28283906 retained_intron
ENSMUST00000160376 (Glis3-004) 28531847-28678690 nonsense_mediated_decay
ENSMUST00000161026 (Glis3-007) 28262973-28540420 retained_intron
ENSMUST00000161328 (Glis3-005) 28531847-28678690 protein_coding
ENSMUST00000162022 (Glis3-001) 28258851-28680077 protein_coding
ENSMUST00000162873 (Glis3-009) 28262426-28300425 processed_transcript
ENSMUSG00000064202 (4430402I18Rik)
RIKEN cDNA 4430402I18 gene 		ENSMUST00000025872 (4430402I18Rik-001) 28923064-28964154 protein_coding
ENSMUST00000159655 (4430402I18Rik-004) 28923533-28929227 processed_transcript
ENSMUST00000160542 (4430402I18Rik-007) 28923688-28963587 protein_coding
ENSMUST00000161813 (4430402I18Rik-005) 28948731-28963908 protein_coding
ENSMUST00000162110 (4430402I18Rik-003) 28923530-28967800 protein_coding
ENSMUST00000164777 (4430402I18Rik-006) 28923688-28963587 protein_coding
ENSMUST00000175647 (4430402I18Rik-002) 28901268-28967730 nonsense_mediated_decay
ENSMUST00000179171 (4430402I18Rik-201) 28893042-28911879 protein_coding
ENSMUSG00000067351 (Rps15a-ps2)
ribosomal protein S15A, pseudogene 2 		ENSMUST00000087473 (Rps15a-ps2-001) 28742159-28742551 processed_pseudogene
ENSMUSG00000089952 (4933413C19Rik)
RIKEN cDNA 4933413C19 gene 		ENSMUST00000162380 (4933413C19Rik-001) 28580533-28583294 sense_intronic
ENSMUSG00000089993 (Gm5822)
predicted gene 5822 		ENSMUST00000161562 (Gm5822-001) 28862330-28863707 processed_pseudogene
ENSMUSG00000090737 (Gm6788)
predicted gene 6788 		ENSMUST00000166459 (Gm6788-001) 28763161-28763430 processed_pseudogene
ENSMUSG00000097735 (D930032P07Rik)
RIKEN cDNA D930032P07 gene 		ENSMUST00000181393 (D930032P07Rik-201) 28678224-28720027 lincRNA
ENSMUST00000181625 (D930032P07Rik-202) 28678228-28719752 lincRNA
ENSMUSG00000098069 (Gm26942)
predicted gene, 26942 		ENSMUST00000182854 (Gm26942-001) 28812406-28813202 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NI_0001ENSG00000106688ENST00000262352ENST00000422398ENST00000490167ENSG00000107249ENST00000324333ENST00000381971ENST00000461870ENST00000462164ENST00000463680ENST00000464391ENST00000465708ENST00000467497ENST00000469833ENST00000471664ENST00000473846ENST00000477901ENST00000478315ENST00000478844ENST00000481827ENST00000490709ENST00000491889ENSG00000230001ENST00000457383CIL_0000NI_0002ENSMUSG00000024935ENSMUST00000025875ENSMUST00000160702ENSMUST00000161119ENSMUST00000161340ENSMUST00000162189ENSMUSG00000052942ENSMUST00000065113ENSMUST00000112612ENSMUST00000159178ENSMUST00000159520ENSMUST00000159639ENSMUST00000160376ENSMUST00000161026ENSMUST00000161328ENSMUST00000162022ENSMUST00000162873ENSMUSG00000064202ENSMUST00000025872ENSMUST00000159655ENSMUST00000160542ENSMUST00000161813ENSMUST00000162110ENSMUST00000164777ENSMUST00000175647ENSMUST00000179171ENSMUSG00000067351ENSMUST00000087473ENSMUSG00000089952ENSMUST00000162380ENSMUSG00000089993ENSMUST00000161562ENSMUSG00000090737ENSMUST00000166459ENSMUSG00000097735ENSMUST00000181393ENSMUST00000181625ENSMUSG00000098069ENSMUST00000182854
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000NI_0001ENSG00000106688ENST00000262352ENST00000422398ENSG00000107249ENST00000324333ENST00000461870ENST00000465708ENST00000467497ENST00000481827ENST00000490709ENSG00000230001ENST00000457383CIL_0000NI_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106688 ENST00000262352 1.809±0.00 1.620±0.00 4.456±0.00 5.063±1.42 0.685±0.09 1.177±0.02 0.296±0.17 5.466±2.34 14.859±14.05 4.092±0.52 0.329±0.25 0.974±0.40 3.172±0.73 1.452±0.00
ENST00000422398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.460±0.00 N/A N/A 0.451±0.00
ENST00000490167 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000107249 ENST00000324333 N/A 0.894±0.00 N/A 0.492±0.07 N/A 0.227±0.13 0.132±0.00 0.983±0.84 0.225±0.10 N/A N/A 1.367±0.88 0.275±0.00 0.984±0.00
ENST00000381971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.02 N/A N/A N/A
ENST00000462164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465708 N/A N/A N/A N/A N/A 1.087±0.00 N/A N/A N/A 1.235±0.00 N/A N/A N/A N/A
ENST00000467497 N/A N/A N/A N/A N/A 0.471±0.00 N/A 0.456±0.00 N/A N/A N/A N/A N/A N/A
ENST00000469833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473846 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481827 N/A N/A N/A N/A 1.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490709 N/A N/A N/A 2.690±0.00 N/A N/A N/A N/A N/A N/A 3.547±0.00 N/A N/A N/A
ENST00000491889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230001 ENST00000457383 0.015±0.00 0.059±0.00 N/A 0.029±0.00 0.653±0.00 N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A 0.075±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024935 ENSMUST00000025875 2.719±0.98 N/A 1.054±0.00 4.776±2.68 N/A N/A 0.703±0.09 19.107±6.27 N/A 2.474±0.18 0.548±0.18 1.777±0.73 3.674±2.74 N/A
ENSMUST00000160702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161340 N/A N/A N/A N/A N/A 15.023±0.00 N/A N/A N/A N/A N/A 9.960±0.00 N/A N/A
ENSMUST00000162189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052942 ENSMUST00000065113 N/A 0.414±0.00 N/A 0.249±0.00 N/A 0.565±0.10 N/A 1.665±0.00 N/A 0.689±0.28 N/A 0.640±0.03 N/A 0.117±0.00
ENSMUST00000112612 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.02 N/A N/A N/A N/A N/A
ENSMUST00000159178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159520 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159639 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.14 N/A N/A N/A N/A N/A
ENSMUST00000160376 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161026 1.746±0.00 0.739±0.29 N/A N/A 0.452±0.13 0.771±0.10 0.123±0.04 2.918±0.71 0.038±0.01 0.943±0.21 N/A 2.343±0.35 0.213±0.09 0.180±0.09
ENSMUST00000161328 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162022 2.485±1.71 0.803±0.14 0.430±0.07 0.377±0.21 0.284±0.21 1.121±0.20 0.039±0.01 6.119±1.47 0.052±0.03 1.183±0.28 0.038±0.02 1.709±0.57 0.517±0.32 0.220±0.06
ENSMUST00000162873 1.219±0.08 N/A N/A N/A 1.408±0.57 N/A N/A N/A 0.070±0.03 N/A 0.068±0.03 N/A N/A N/A
ENSMUSG00000064202 ENSMUST00000025872 N/A N/A N/A N/A N/A N/A 1.845±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159655 N/A N/A N/A N/A N/A N/A N/A N/A 4.491±0.00 N/A N/A N/A N/A 113.843±0.00
ENSMUST00000160542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161813 N/A N/A N/A N/A N/A N/A 13.929±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162110 N/A N/A N/A N/A N/A N/A 2.334±0.60 N/A N/A N/A 0.764±0.00 N/A N/A 97.875±30.77
ENSMUST00000164777 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A
ENSMUST00000175647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179171 4.545±1.84 N/A N/A 7.560±6.55 N/A 12.257±2.26 N/A 30.141±5.74 N/A 5.249±0.93 0.508±0.08 6.064±2.09 5.252±3.25 N/A
ENSMUSG00000067351 ENSMUST00000087473 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000089952 ENSMUST00000162380 0.125±0.11 0.074±0.02 0.023±0.01 0.047±0.03 0.039±0.02 0.054±0.02 0.021±0.01 0.268±0.15 0.008±0.00 0.369±0.09 N/A 0.070±0.05 0.020±0.00 0.502±0.00
ENSMUSG00000089993 ENSMUST00000161562 0.128±0.12 N/A 0.169±0.06 0.164±0.06 0.246±0.23 0.134±0.06 0.048±0.02 0.455±0.06 0.072±0.03 0.140±0.06 0.045±0.02 0.309±0.25 0.528±0.37 0.058±0.01
ENSMUSG00000090737 ENSMUST00000166459 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A
ENSMUSG00000097735 ENSMUST00000181393 N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A N/A 0.005±0.00 0.083±0.07
ENSMUST00000181625 N/A 0.106±0.00 N/A 0.036±0.02 0.096±0.06 N/A 0.028±0.00 0.081±0.01 N/A N/A N/A 0.018±0.00 0.040±0.01 0.136±0.07
ENSMUSG00000098069 ENSMUST00000182854 N/A N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A 0.060±0.00 N/A 0.042±0.00 N/A 0.107±0.00

Loading