C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GLIS family zinc finger 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052942 Glis3 10090 - 19:28258851-28680077 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065113 Glis3-003 28262364-28679666 nonsense_mediated_decay
  ENSMUST00000112612 Glis3-002 28349573-28680077 protein_coding
  ENSMUST00000159178 Glis3-006 28531847-28666685 protein_coding
  ENSMUST00000159520 Glis3-008 28262347-28326006 processed_transcript
  ENSMUST00000159639 Glis3-010 28263951-28283906 retained_intron
  ENSMUST00000160376 Glis3-004 28531847-28678690 nonsense_mediated_decay
  ENSMUST00000161026 Glis3-007 28262973-28540420 retained_intron
  ENSMUST00000161328 Glis3-005 28531847-28678690 protein_coding
  ENSMUST00000162022 Glis3-001 28258851-28680077 protein_coding
  ENSMUST00000162873 Glis3-009 28262426-28300425 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065113ENSMUST00000112612ENSMUST00000159520ENSMUST00000159639ENSMUST00000160376ENSMUST00000161026ENSMUST00000161328ENSMUST00000162022ENSMUST00000162873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065113 N/A 0.414±0.00 N/A 0.249±0.00 N/A 0.565±0.10 N/A 1.665±0.00 N/A 0.689±0.28 N/A 0.640±0.03 N/A 0.117±0.00
ENSMUST00000112612 N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.02 N/A N/A N/A N/A N/A
ENSMUST00000159520 N/A N/A N/A N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159639 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.14 N/A N/A N/A N/A N/A
ENSMUST00000160376 N/A N/A N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161026 1.746±0.00 0.739±0.29 N/A N/A 0.452±0.13 0.771±0.10 0.123±0.04 2.918±0.71 0.038±0.01 0.943±0.21 N/A 2.343±0.35 0.213±0.09 0.180±0.09
ENSMUST00000161328 N/A N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162022 2.485±1.71 0.803±0.14 0.430±0.07 0.377±0.21 0.284±0.21 1.121±0.20 0.039±0.01 6.119±1.47 0.052±0.03 1.183±0.28 0.038±0.02 1.709±0.57 0.517±0.32 0.220±0.06
ENSMUST00000162873 1.219±0.08 N/A N/A N/A 1.408±0.57 N/A N/A N/A 0.070±0.03 N/A 0.068±0.03 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F0 CIL_0000F0_0002 CGP 19:27761721-28680077
CIL_0000NI CIL_0000NI_0002 CGP 19:28258851-28913960

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005794 IEA Golgi apparatus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069726 glis3 GLIS family zinc finger 3 protein_coding Danio_rerio
ENSG00000107249 GLIS3 GLIS family zinc finger 3 protein_coding Homo_sapiens

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