C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycystic kidney disease 2-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318222 PKD2L1-001 ENSG00000107593 9606 - 10:100288154-100330486 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryTestisENST00000318222
Transcript ID Brain Ovary Testis
ENST00000318222 0.216±0.00 0.042±0.00 0.295±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_0005E2 CIL_0005E2_0001 CGP 10:100273280-100330486
CIL_0005E3 CIL_0005E3_0001 CGP 10:100288154-100364834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001581 ISS detection of chemical stimulus involved in sensory perception of sour taste
GO:0005216 IEA ion channel activity
GO:0005227 IDA calcium activated cation channel activity
GO:0005261 IDA cation channel activity
GO:0005262 IBA calcium channel activity
GO:0005272 IDA sodium channel activity
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005886 IMP plasma membrane
GO:0006811 IEA ion transport
GO:0006812 ISS cation transport
GO:0007224 ISS smoothened signaling pathway
GO:0008092 IPI cytoskeletal protein binding
GO:0008324 ISS cation transmembrane transporter activity
GO:0009986 ISS cell surface
GO:0015269 IDA calcium-activated potassium channel activity
GO:0016020 IDA:IEA membrane
GO:0016021 NAS integral component of membrane
GO:0031513 IDA nonmotile primary cilium
GO:0033040 ISS sour taste receptor activity
GO:0034704 IDA calcium channel complex
GO:0035725 IDA sodium ion transmembrane transport
GO:0042802 ISS identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0050915 IMP sensory perception of sour taste
GO:0050982 IBA detection of mechanical stimulus
GO:0051371 IPI muscle alpha-actinin binding
GO:0051393 IPI alpha-actinin binding
GO:0055085 IEA transmembrane transport
GO:0070207 IDA protein homotrimerization
GO:0070588 IEA calcium ion transmembrane transport
GO:0071468 ISS cellular response to acidic pH
GO:0071805 IDA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042026 Pkd2l1-001 protein_coding Mus_musculus 0 2529
ENSMUST00000161357 Pkd2l1-002 retained_intron Mus_musculus 0 2034
ENSDART00000020412 pkd2-001 protein_coding Danio_rerio 2e-34 152

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