C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycystic kidney disease 2-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000528248 PKD2L1-004 ENSG00000107593 9606 - 10:100288396-100329940 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000528248
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000528248 0.061±0.00 0.067±0.00 0.272±0.07 0.029±0.01 0.030±0.02 0.203±0.04 0.007±0.00 0.035±0.00 0.056±0.00 0.446±0.33 0.068±0.05 0.247±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_0005E2 CIL_0005E2_0001 CGP 10:100273280-100330486
CIL_0005E3 CIL_0005E3_0001 CGP 10:100288154-100364834

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042026 Pkd2l1-001 protein_coding Mus_musculus 0 2394
ENSMUST00000161357 Pkd2l1-002 retained_intron Mus_musculus 0 1899
ENSDART00000020412 pkd2-001 protein_coding Danio_rerio 1e-34 152

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