C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: erythroid differentiation regulatory factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107938 EDRF1 9606 + 10:125719515-125764143 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337623 EDRF1-001 125719703-125764139 protein_coding
  ENST00000356792 EDRF1-007 125719576-125763651 protein_coding
  ENST00000368812 EDRF1-004 125749297-125764143 retained_intron
  ENST00000368813 EDRF1-002 125735887-125741665 protein_coding
  ENST00000368815 EDRF1-008 125719576-125763651 nonsense_mediated_decay
  ENST00000419769 EDRF1-006 125719515-125763579 nonsense_mediated_decay
  ENST00000469725 EDRF1-005 125746701-125749441 retained_intron
  ENST00000481600 EDRF1-003 125719515-125764143 nonsense_mediated_decay
  ENST00000525091 EDRF1-009 125719702-125749096 retained_intron
  ENST00000525358 EDRF1-013 125753779-125763582 nonsense_mediated_decay
  ENST00000525524 EDRF1-011 125747953-125749813 retained_intron
  ENST00000527655 EDRF1-012 125749273-125763706 retained_intron
  ENST00000530795 EDRF1-010 125725766-125735749 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337623ENST00000356792ENST00000368812ENST00000368813ENST00000419769ENST00000481600ENST00000525091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337623 0.810±0.00 1.250±0.00 N/A 1.094±0.46 1.271±0.14 1.452±0.25 0.869±0.56 1.575±0.00 0.349±0.00 0.734±0.49 2.612±0.00 1.596±0.69 0.691±0.15 6.254±0.45
ENST00000356792 0.449±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.737±0.34 N/A 3.070±0.00 0.371±0.14 N/A
ENST00000368812 N/A 2.410±0.00 N/A 2.448±0.00 2.179±0.00 1.339±0.00 0.686±0.00 2.138±1.19 0.780±0.00 0.716±0.00 N/A 4.365±1.45 0.875±0.23 10.736±0.00
ENST00000368813 N/A 2.778±0.00 N/A N/A N/A N/A N/A N/A 3.308±0.00 N/A 1.509±0.00 N/A N/A N/A
ENST00000419769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.315±0.00 3.469±0.00
ENST00000481600 N/A N/A N/A N/A N/A N/A N/A N/A 1.551±0.00 N/A N/A N/A N/A N/A
ENST00000525091 N/A 0.669±0.00 0.674±0.00 0.621±0.00 0.878±0.16 N/A N/A N/A N/A 0.661±0.34 0.601±0.00 0.771±0.19 0.250±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JW CIL_0002JW_0002 CGP 10:125576522-125764143
CIL_0001V7 CIL_0001V7_0001 CGP 10:125719515-125775821

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019834 EDRF1 erythroid differentiation regulatory factor 1 protein_coding Danio_rerio
ENSMUSG00000039990 Edrf1 erythroid differentiation regulatory factor 1 protein_coding Mus_musculus

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