C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: erythroid differentiation regulatory factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039990 Edrf1 10090 + 7:133637543-133672971 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051169 Edrf1-001 133637543-133672971 protein_coding
  ENSMUST00000128901 Edrf1-003 133637693-133672179 protein_coding
  ENSMUST00000137338 Edrf1-005 133667206-133671470 retained_intron
  ENSMUST00000138370 Edrf1-002 133657105-133661881 nonsense_mediated_decay
  ENSMUST00000154795 Edrf1-004 133637861-133639349 retained_intron
  ENSMUST00000176661 Edrf1-006 133665926-133671929 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051169ENSMUST00000128901ENSMUST00000176661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051169 1.006±0.31 0.730±0.01 1.617±0.22 2.211±0.18 1.137±0.05 0.998±0.04 0.402±0.10 1.174±0.21 1.121±0.59 0.970±0.00 0.378±0.12 1.205±0.64 1.798±0.26 1.751±0.81
ENSMUST00000128901 1.434±0.60 1.671±0.64 3.316±0.79 4.268±0.59 1.854±0.53 1.376±0.19 1.212±0.18 1.592±0.42 2.338±0.97 1.935±0.28 1.473±0.22 2.757±1.30 4.401±1.06 2.800±1.07
ENSMUST00000176661 N/A 2.345±0.00 N/A N/A N/A 2.311±0.17 N/A N/A N/A N/A N/A 3.655±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JW CIL_0002JW_0003 CGP 7:133587024-133672971
CIL_0001V7 CIL_0001V7_0002 CGP 7:133637543-133680061

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019834 EDRF1 erythroid differentiation regulatory factor 1 protein_coding Danio_rerio
ENSG00000107938 EDRF1 erythroid differentiation regulatory factor 1 protein_coding Homo_sapiens

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