C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108298 RPL19 9606 + 17:39200283-39204727 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000225430 RPL19-001 39200283-39204727 protein_coding
  ENST00000577741 RPL19-004 39202042-39204648 retained_intron
  ENST00000577759 RPL19-008 39204164-39204727 retained_intron
  ENST00000579260 RPL19-002 39200342-39204711 protein_coding
  ENST00000579374 RPL19-006 39200316-39204727 protein_coding
  ENST00000580333 RPL19-005 39200317-39202753 retained_intron
  ENST00000582193 RPL19-003 39200345-39204720 protein_coding
  ENST00000585199 RPL19-007 39201132-39203079 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225430ENST00000579374
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225430 302.245±0.00 320.997±0.00 55.350±0.00 100.059±9.02 188.147±72.17 195.334±14.80 50.465±0.83 79.800±16.59 141.889±0.00 101.291±0.00 125.792±2.63 458.263±193.25 247.500±97.50 141.173±44.02
ENST00000579374 438.141±0.00 769.403±0.00 49.184±0.00 112.794±37.21 225.870±86.09 411.873±314.11 145.809±98.61 333.879±181.39 272.145±140.00 643.556±561.00 453.437±368.67 1330.477±1055.11 1075.127±514.72 343.064±100.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0000TJ CIL_0000TJ_0002 CGP 17:39173456-39204727
CIL_0006QM CIL_0006QM_0001 CGP 17:39200283-39225872

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013307 rpl19 ribosomal protein L19 protein_coding Danio_rerio
ENSMUSG00000017404 Rpl19 ribosomal protein L19 protein_coding Mus_musculus

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