C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225430 RPL19-001 ENSG00000108298 9606 + 17:39200283-39204727 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000225430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000225430 302.245±0.00 320.997±0.00 55.350±0.00 100.059±9.02 188.147±72.17 195.334±14.80 50.465±0.83 79.800±16.59 141.889±0.00 101.291±0.00 125.792±2.63 458.263±193.25 247.500±97.50 141.173±44.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_0000TJ CIL_0000TJ_0002 CGP 17:39173456-39204727
CIL_0006QM CIL_0006QM_0001 CGP 17:39200283-39225872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017548 Rpl19-001 protein_coding Mus_musculus 0 948
ENSMUST00000122422 Rpl19-ps11-001 processed_pseudogene Mus_musculus 0 911
ENSMUST00000092425 Rpl19-002 protein_coding Mus_musculus 0 859
ENSMUST00000121059 Rpl19-ps1-001 processed_pseudogene Mus_musculus 0 821
ENSMUST00000121251 Rpl19-ps12-001 processed_pseudogene Mus_musculus 0 761
ENSMUST00000159343 Gm16238-001 processed_pseudogene Mus_musculus 0 745
ENSMUST00000167150 Rpl19-ps4-201 processed_pseudogene Mus_musculus 0 645
ENSMUST00000121130 Gm15566-001 processed_pseudogene Mus_musculus 0 636
ENSMUST00000117145 Gm13216-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000134435 Rpl19-003 retained_intron Mus_musculus 0 226

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