C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: upstream binding transcription factor, RNA polymerase I
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108312 UBTF 9606 - 17:44205033-44221626 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302904 UBTF-002 44205033-44221626 protein_coding
  ENST00000343638 UBTF-001 44205033-44220963 protein_coding
  ENST00000393606 UBTF-004 44207116-44219750 protein_coding
  ENST00000436088 UBTF-005 44206920-44219498 protein_coding
  ENST00000526094 UBTF-007 44207240-44218502 protein_coding
  ENST00000527034 UBTF-014 44206594-44220854 protein_coding
  ENST00000529042 UBTF-010 44212180-44213356 retained_intron
  ENST00000529373 UBTF-011 44209435-44211002 protein_coding
  ENST00000529383 UBTF-008 44207240-44218502 protein_coding
  ENST00000529947 UBTF-013 44207487-44209422 nonsense_mediated_decay
  ENST00000530828 UBTF-009 44213225-44218502 protein_coding
  ENST00000531368 UBTF-012 44209219-44210142 retained_intron
  ENST00000533177 UBTF-006 44206595-44219121 protein_coding
  ENST00000537550 UBTF-015 44215354-44218540 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302904ENST00000343638ENST00000393606ENST00000436088ENST00000526094ENST00000529373ENST00000529383ENST00000533177
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302904 N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A
ENST00000343638 N/A N/A 1.266±0.00 1.238±0.00 N/A 1.233±0.00 0.999±0.66 0.544±0.00 1.211±0.00 1.471±0.39 1.796±1.37 7.782±5.31 7.715±2.14 5.360±0.00
ENST00000393606 5.562±0.00 11.245±0.00 1.080±0.00 5.525±3.82 10.043±0.00 3.852±2.56 2.806±1.61 4.944±3.96 1.729±0.00 N/A N/A 20.458±0.00 N/A N/A
ENST00000436088 7.641±0.00 10.611±0.00 N/A 5.633±0.00 7.196±0.00 6.482±3.82 4.758±0.00 10.186±0.00 2.354±1.27 6.495±0.00 10.223±0.00 14.293±11.13 7.328±1.95 12.443±4.42
ENST00000526094 N/A N/A 0.825±0.00 N/A N/A N/A 0.718±0.00 2.104±0.00 N/A N/A 2.654±0.00 2.930±0.00 N/A N/A
ENST00000529373 N/A N/A 5.670±0.00 N/A 14.329±0.00 6.039±0.00 N/A N/A 5.815±0.00 9.194±0.00 N/A N/A 21.275±0.00 N/A
ENST00000529383 N/A N/A 1.273±0.00 2.576±0.00 2.182±0.00 N/A N/A N/A N/A 4.436±0.00 N/A 1.258±0.00 N/A N/A
ENST00000533177 6.339±0.00 9.192±0.00 N/A 5.363±0.00 9.784±0.00 10.394±0.00 4.147±0.00 7.708±0.00 2.873±0.00 7.018±0.00 16.245±0.00 16.491±1.95 12.487±0.16 15.148±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0004D4 CIL_0004D4_0002 CGP 17:44191805-44221626
CIL_0004D5 CIL_0004D5_0002 CGP 17:44205033-44268141

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 ISS nucleolus
GO:0006356 TAS regulation of transcription from RNA polymerase I promoter
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0045943 ISS positive regulation of transcription from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035066 ubtf upstream binding transcription factor, RNA polymerase I protein_coding Danio_rerio

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