C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream binding transcription factor, RNA polymerase I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000529383 UBTF-008 ENSG00000108312 9606 - 17:44207240-44218502 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLungOvaryENST00000529383
Transcript ID Bladder Brain Breast Lung Ovary
ENST00000529383 1.273±0.00 2.576±0.00 2.182±0.00 4.436±0.00 1.258±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0004D4 CIL_0004D4_0002 CGP 17:44191805-44221626
CIL_0004D5 CIL_0004D5_0002 CGP 17:44205033-44268141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 ISS nucleolus
GO:0006356 TAS regulation of transcription from RNA polymerase I promoter
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0045943 ISS positive regulation of transcription from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079589 Ubtf-006 protein_coding Mus_musculus 0 3273
ENSMUST00000173870 Ubtf-007 protein_coding Mus_musculus 0 3251
ENSMUST00000107123 Ubtf-011 protein_coding Mus_musculus 0 3249
ENSMUST00000174302 Ubtf-002 protein_coding Mus_musculus 0 3249
ENSMUST00000178839 Ubtf-201 protein_coding Mus_musculus 0 1977
ENSMUST00000107119 Ubtf-008 protein_coding Mus_musculus 0 1977
ENSMUST00000107117 Ubtf-003 protein_coding Mus_musculus 0 1977
ENSMUST00000107115 Ubtf-005 protein_coding Mus_musculus 0 1977
ENSMUST00000006754 Ubtf-001 protein_coding Mus_musculus 0 1951
ENSMUST00000128016 Ubtf-004 protein_coding Mus_musculus 0 798
ENSMUST00000146896 Ubtf-012 protein_coding Mus_musculus 0 466
ENSMUST00000174726 Ubtf-010 retained_intron Mus_musculus 0 392

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