C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004D4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000029331-ENSDARG00000035066 CGP 7955 3:19914994-19953067
GeneTranscriptPositionBiotype
ENSDARG00000029331 (atxn7l3)
ataxin 7-like 3 		ENSDART00000104118 (atxn7l3-201) 19914994-19929921 protein_coding
ENSDARG00000035066 (ubtf)
upstream binding transcription factor, RNA polymerase I 		ENSDART00000056614 (ubtf-001) 19931192-19952956 protein_coding
ENSDART00000126915 (ubtf-002) 19938947-19953067 protein_coding
CIL_0004D4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087152-ENSG00000108312 CGP 9606 17:44191805-44221626
GeneTranscriptPositionBiotype
ENSG00000087152 (ATXN7L3)
ataxin 7-like 3 		ENST00000389384 (ATXN7L3-001) 44191805-44198379 protein_coding
ENST00000454077 (ATXN7L3-003) 44191805-44198070 protein_coding
ENST00000586688 (ATXN7L3-010) 44194371-44195293 retained_intron
ENST00000587022 (ATXN7L3-005) 44195121-44196213 retained_intron
ENST00000587097 (ATXN7L3-002) 44194383-44199852 protein_coding
ENST00000589607 (ATXN7L3-007) 44194651-44196163 retained_intron
ENST00000589805 (ATXN7L3-011) 44196964-44199206 protein_coding
ENST00000590169 (ATXN7L3-004) 44196941-44198511 protein_coding
ENST00000590537 (ATXN7L3-006) 44194540-44196166 protein_coding
ENST00000591295 (ATXN7L3-009) 44191805-44196053 protein_coding
ENST00000591807 (ATXN7L3-008) 44194657-44195476 retained_intron
ENST00000593073 (ATXN7L3-012) 44194240-44200113 processed_transcript
ENSG00000108312 (UBTF)
upstream binding transcription factor, RNA polymerase I 		ENST00000302904 (UBTF-002) 44205033-44221626 protein_coding
ENST00000343638 (UBTF-001) 44205033-44220963 protein_coding
ENST00000393606 (UBTF-004) 44207116-44219750 protein_coding
ENST00000436088 (UBTF-005) 44206920-44219498 protein_coding
ENST00000526094 (UBTF-007) 44207240-44218502 protein_coding
ENST00000527034 (UBTF-014) 44206594-44220854 protein_coding
ENST00000529042 (UBTF-010) 44212180-44213356 retained_intron
ENST00000529373 (UBTF-011) 44209435-44211002 protein_coding
ENST00000529383 (UBTF-008) 44207240-44218502 protein_coding
ENST00000529947 (UBTF-013) 44207487-44209422 nonsense_mediated_decay
ENST00000530828 (UBTF-009) 44213225-44218502 protein_coding
ENST00000531368 (UBTF-012) 44209219-44210142 retained_intron
ENST00000533177 (UBTF-006) 44206595-44219121 protein_coding
ENST00000537550 (UBTF-015) 44215354-44218540 processed_transcript
ENSG00000275107 (MIR6782)
microRNA 6782 		ENST00000619539 (MIR6782-201) 44207771-44207839 miRNA
CIL_0004D4_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059995-ENSMUSG00000020923 CGP 10090 11:102289300-102319742
GeneTranscriptPositionBiotype
ENSMUSG00000020923 (Ubtf)
upstream binding transcription factor, RNA polymerase I 		ENSMUST00000006754 (Ubtf-001) 102305924-102319096 protein_coding
ENSMUST00000079589 (Ubtf-006) 102305924-102316680 protein_coding
ENSMUST00000107115 (Ubtf-005) 102305924-102316704 protein_coding
ENSMUST00000107117 (Ubtf-003) 102305924-102317871 protein_coding
ENSMUST00000107119 (Ubtf-008) 102305993-102317287 protein_coding
ENSMUST00000107123 (Ubtf-011) 102306298-102317635 protein_coding
ENSMUST00000128016 (Ubtf-004) 102313609-102316705 protein_coding
ENSMUST00000146896 (Ubtf-012) 102311755-102316675 protein_coding
ENSMUST00000173870 (Ubtf-007) 102306486-102319742 protein_coding
ENSMUST00000174302 (Ubtf-002) 102304560-102319096 protein_coding
ENSMUST00000174400 (Ubtf-009) 102309040-102309908 retained_intron
ENSMUST00000174726 (Ubtf-010) 102308530-102309440 retained_intron
ENSMUST00000178839 (Ubtf-201) 102304561-102319096 protein_coding
ENSMUSG00000059995 (Atxn7l3)
ataxin 7-like 3 		ENSMUST00000073234 (Atxn7l3-001) 102289300-102296631 protein_coding
ENSMUST00000107132 (Atxn7l3-201) 102289301-102296629 protein_coding
ENSMUST00000107134 (Atxn7l3-002) 102289300-102295312 protein_coding
ENSMUST00000137387 (Atxn7l3-003) 102289300-102294987 protein_coding
ENSMUST00000141516 (Atxn7l3-005) 102289300-102294163 protein_coding
ENSMUST00000145484 (Atxn7l3-004) 102289300-102293444 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D4_0001ENSDARG00000029331ENSDART00000104118ENSDARG00000035066ENSDART00000056614ENSDART00000126915CIL_0004D4_0002ENSG00000087152ENST00000389384ENST00000454077ENST00000586688ENST00000587022ENST00000587097ENST00000589607ENST00000589805ENST00000590169ENST00000590537ENST00000591295ENST00000591807ENST00000593073ENSG00000108312ENST00000302904ENST00000343638ENST00000393606ENST00000436088ENST00000526094ENST00000527034ENST00000529042ENST00000529373ENST00000529383ENST00000529947ENST00000530828ENST00000531368ENST00000533177ENST00000537550ENSG00000275107ENST00000619539CIL_0004D4_0003ENSMUSG00000020923ENSMUST00000006754ENSMUST00000079589ENSMUST00000107115ENSMUST00000107117ENSMUST00000107119ENSMUST00000107123ENSMUST00000128016ENSMUST00000146896ENSMUST00000173870ENSMUST00000174302ENSMUST00000174400ENSMUST00000174726ENSMUST00000178839ENSMUSG00000059995ENSMUST00000073234ENSMUST00000107132ENSMUST00000107134ENSMUST00000137387ENSMUST00000141516ENSMUST00000145484
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004D4_0001ENSDARG00000029331ENSDART00000104118ENSDARG00000035066ENSDART00000056614CIL_0004D4_0002ENSG00000087152ENST00000389384ENST00000454077ENST00000587097ENST00000589805ENST00000590169ENST00000591295ENST00000593073ENSG00000108312ENST00000302904ENST00000343638ENST00000393606ENST00000436088ENST00000526094ENST00000529373ENST00000529383ENST00000533177ENSG00000275107ENST00000619539CIL_0004D4_0003ENSMUSG00000020923ENSMUST00000006754ENSMUST00000079589ENSMUST00000107115ENSMUST00000107117ENSMUST00000107119ENSMUST00000107123ENSMUST00000173870ENSMUST00000174302ENSMUST00000174726ENSMUST00000178839ENSMUSG00000059995ENSMUST00000073234ENSMUST00000107132ENSMUST00000107134ENSMUST00000137387ENSMUST00000141516ENSMUST00000145484
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000029331 ENSDART00000104118 N/A N/A N/A 12.520±8.67 N/A N/A 2.157±1.72 1.483±1.51 0.769±0.00 N/A 2.139±0.00 N/A N/A N/A
ENSDARG00000035066 ENSDART00000056614 N/A N/A N/A 19.009±2.84 N/A N/A 8.283±4.20 12.367±0.00 1.515±0.00 N/A 4.232±0.00 N/A N/A N/A
ENSDART00000126915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087152 ENST00000389384 2.388±0.00 4.321±0.00 0.276±0.00 0.850±0.00 2.200±0.00 3.399±0.00 N/A N/A N/A 3.189±2.44 N/A 11.668±10.94 7.725±1.24 12.999±8.36
ENST00000454077 9.651±0.00 4.042±0.00 0.587±0.00 15.590±10.53 2.657±2.05 4.780±0.00 3.864±3.48 1.345±0.00 2.511±1.16 3.870±0.00 0.397±0.00 7.506±5.78 8.495±3.29 10.471±0.00
ENST00000586688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587097 N/A N/A N/A 4.394±0.00 2.577±0.00 1.979±0.00 0.583±0.00 N/A 1.421±0.00 1.026±0.00 1.087±0.00 3.755±0.00 9.069±0.00 N/A
ENST00000589607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.870±0.00 N/A 25.086±0.00 95.224±0.00
ENST00000590169 N/A N/A 3.251±0.00 7.260±0.00 N/A 4.503±0.00 N/A 2.767±0.00 3.992±0.00 1.997±0.00 N/A 57.306±50.14 N/A 80.557±0.00
ENST00000590537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591295 N/A 7.169±0.00 N/A N/A 2.141±0.00 3.180±0.00 N/A N/A 3.067±0.00 5.719±0.00 N/A 8.271±0.00 7.170±0.76 4.460±0.00
ENST00000591807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593073 N/A N/A 1.812±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108312 ENST00000302904 N/A N/A N/A N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A
ENST00000343638 N/A N/A 1.266±0.00 1.238±0.00 N/A 1.233±0.00 0.999±0.66 0.544±0.00 1.211±0.00 1.471±0.39 1.796±1.37 7.782±5.31 7.715±2.14 5.360±0.00
ENST00000393606 5.562±0.00 11.245±0.00 1.080±0.00 5.525±3.82 10.043±0.00 3.852±2.56 2.806±1.61 4.944±3.96 1.729±0.00 N/A N/A 20.458±0.00 N/A N/A
ENST00000436088 7.641±0.00 10.611±0.00 N/A 5.633±0.00 7.196±0.00 6.482±3.82 4.758±0.00 10.186±0.00 2.354±1.27 6.495±0.00 10.223±0.00 14.293±11.13 7.328±1.95 12.443±4.42
ENST00000526094 N/A N/A 0.825±0.00 N/A N/A N/A 0.718±0.00 2.104±0.00 N/A N/A 2.654±0.00 2.930±0.00 N/A N/A
ENST00000527034 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529373 N/A N/A 5.670±0.00 N/A 14.329±0.00 6.039±0.00 N/A N/A 5.815±0.00 9.194±0.00 N/A N/A 21.275±0.00 N/A
ENST00000529383 N/A N/A 1.273±0.00 2.576±0.00 2.182±0.00 N/A N/A N/A N/A 4.436±0.00 N/A 1.258±0.00 N/A N/A
ENST00000529947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533177 6.339±0.00 9.192±0.00 N/A 5.363±0.00 9.784±0.00 10.394±0.00 4.147±0.00 7.708±0.00 2.873±0.00 7.018±0.00 16.245±0.00 16.491±1.95 12.487±0.16 15.148±0.00
ENST00000537550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000275107 ENST00000619539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.529±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020923 ENSMUST00000006754 4.167±0.00 5.724±1.25 N/A N/A 7.745±3.31 5.998±0.82 1.632±0.00 N/A 2.228±0.52 5.188±0.01 N/A 6.881±2.47 N/A N/A
ENSMUST00000079589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.162±0.00
ENSMUST00000107115 N/A N/A N/A N/A N/A N/A N/A N/A 8.272±3.68 N/A N/A N/A N/A N/A
ENSMUST00000107117 6.019±2.14 8.081±3.18 6.853±1.69 9.328±1.69 5.746±0.41 6.062±1.87 1.873±0.05 5.761±1.45 3.998±1.60 5.334±1.30 N/A 7.905±1.28 4.884±0.28 2.038±0.67
ENSMUST00000107119 6.321±1.45 N/A 7.368±2.92 10.754±4.72 8.969±0.09 3.643±0.00 4.903±0.99 8.953±1.56 4.639±1.63 6.201±0.87 9.417±1.05 17.784±2.66 13.541±7.40 0.650±0.00
ENSMUST00000107123 N/A N/A 9.100±3.13 26.117±24.02 2.919±0.00 N/A 1.762±0.18 N/A 13.972±8.94 N/A 3.217±1.03 38.492±22.73 24.676±20.13 4.347±2.72
ENSMUST00000128016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.839±0.00 N/A N/A N/A
ENSMUST00000174302 4.208±0.83 N/A 3.855±0.00 8.523±0.00 3.577±0.56 4.581±0.48 1.761±0.34 3.832±0.89 5.200±3.46 4.836±0.00 N/A 4.745±1.31 3.599±1.37 1.761±0.73
ENSMUST00000174400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 136.511±0.00 N/A 26.699±0.00
ENSMUST00000178839 4.185±1.32 5.627±0.29 5.898±1.13 N/A 4.463±1.05 5.120±1.90 1.862±0.32 3.912±1.42 3.678±1.67 4.692±1.06 1.555±0.16 7.391±2.33 2.514±0.00 1.778±0.68
ENSMUSG00000059995 ENSMUST00000073234 4.196±0.80 N/A 6.063±0.13 26.316±14.43 2.345±0.21 6.646±1.25 3.053±1.27 2.663±0.91 3.489±1.99 2.824±0.17 3.202±1.19 6.706±4.75 12.118±8.43 2.864±1.02
ENSMUST00000107132 N/A N/A N/A N/A N/A 4.564±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107134 2.133±0.26 N/A 2.973±1.03 N/A N/A N/A N/A N/A 2.230±0.00 N/A N/A 8.699±2.68 1.560±0.00 N/A
ENSMUST00000137387 5.533±0.99 5.183±0.41 5.610±1.00 22.178±1.24 5.562±1.29 6.355±2.16 3.060±1.43 4.740±2.44 3.652±1.27 7.951±1.01 1.091±0.36 7.940±2.16 6.176±2.90 3.149±1.69
ENSMUST00000141516 N/A 12.419±4.15 2.498±0.00 11.704±0.02 N/A 6.631±4.20 1.172±0.29 2.401±0.00 2.433±0.54 N/A 1.533±0.46 3.735±0.00 1.630±0.00 N/A
ENSMUST00000145484 4.158±1.38 10.751±0.45 N/A N/A 10.295±5.42 6.144±2.03 1.806±0.00 2.166±0.24 N/A 6.026±2.20 1.327±0.00 11.841±4.11 N/A N/A

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