C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream binding transcription factor, RNA polymerase I
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000436088 UBTF-005 ENSG00000108312 9606 - 17:44206920-44219498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000436088
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000436088 7.641±0.00 10.611±0.00 5.633±0.00 7.196±0.00 6.482±3.82 4.758±0.00 10.186±0.00 2.354±1.27 6.495±0.00 10.223±0.00 14.293±11.13 7.328±1.95 12.443±4.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0001 VISTA 17:43966083-44567774
CIL_0004D4 CIL_0004D4_0002 CGP 17:44191805-44221626
CIL_0004D5 CIL_0004D5_0002 CGP 17:44205033-44268141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005730 ISS nucleolus
GO:0006356 TAS regulation of transcription from RNA polymerase I promoter
GO:0006360 TAS transcription from RNA polymerase I promoter
GO:0006361 TAS transcription initiation from RNA polymerase I promoter
GO:0006362 TAS transcription elongation from RNA polymerase I promoter
GO:0006363 TAS termination of RNA polymerase I transcription
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0045943 ISS positive regulation of transcription from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107123 Ubtf-011 protein_coding Mus_musculus 0 3397
ENSMUST00000079589 Ubtf-006 protein_coding Mus_musculus 0 3338
ENSMUST00000174302 Ubtf-002 protein_coding Mus_musculus 0 3338
ENSMUST00000173870 Ubtf-007 protein_coding Mus_musculus 0 3280
ENSMUST00000178839 Ubtf-201 protein_coding Mus_musculus 0 2065
ENSMUST00000107119 Ubtf-008 protein_coding Mus_musculus 0 2065
ENSMUST00000107117 Ubtf-003 protein_coding Mus_musculus 0 2065
ENSMUST00000107115 Ubtf-005 protein_coding Mus_musculus 0 2065
ENSMUST00000006754 Ubtf-001 protein_coding Mus_musculus 0 2039
ENSMUST00000128016 Ubtf-004 protein_coding Mus_musculus 0 774
ENSMUST00000146896 Ubtf-012 protein_coding Mus_musculus 0 442
ENSMUST00000174726 Ubtf-010 retained_intron Mus_musculus 0 392

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