C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 20, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108950 FAM20A 9606 - 17:68535113-68601389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000226094 FAM20A-003 68535113-68558390 processed_transcript
  ENST00000375556 FAM20A-006 68537123-68541991 retained_intron
  ENST00000590074 FAM20A-002 68537617-68600596 nonsense_mediated_decay
  ENST00000590873 FAM20A-005 68537121-68543669 nonsense_mediated_decay
  ENST00000592554 FAM20A-001 68536871-68601389 protein_coding
  ENST00000592847 FAM20A-004 68540911-68558375 processed_transcript
  ENST00000619787 FAM20A-201 68535117-68540577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000226094ENST00000375556ENST00000590074ENST00000590873ENST00000592554ENST00000592847ENST00000619787
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000226094 N/A N/A 0.340±0.00 N/A N/A N/A N/A N/A 2.467±0.00 1.625±0.00 N/A 1.772±0.00 N/A N/A
ENST00000375556 N/A 2.460±0.00 0.315±0.00 0.172±0.00 0.889±0.00 0.389±0.00 0.445±0.00 6.781±0.00 4.922±0.00 6.682±0.00 0.231±0.00 1.153±0.00 1.241±0.00 5.099±2.66
ENST00000590074 N/A 2.758±0.00 0.699±0.00 N/A 0.885±0.00 0.563±0.00 N/A 3.284±0.00 N/A 1.524±0.00 N/A N/A N/A N/A
ENST00000590873 N/A N/A N/A 0.481±0.17 N/A 0.538±0.00 1.443±0.00 N/A 22.356±0.00 N/A N/A 3.513±0.00 N/A 7.265±0.00
ENST00000592554 3.852±0.00 6.597±0.00 N/A 0.207±0.07 1.500±0.85 0.498±0.00 1.359±0.00 8.663±4.97 18.552±0.00 8.373±0.00 0.456±0.00 3.599±4.03 7.138±0.73 4.488±1.16
ENST00000592847 N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A 0.689±0.00 N/A 0.531±0.00 N/A N/A N/A
ENST00000619787 N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GP CIL_0006GP_0001 CGP 17:68420948-68551319
CIL_0003AG CIL_0003AG_0002 CGP 17:68511780-68601389

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005623 ISS cell
GO:0005794 IEA Golgi apparatus
GO:0044691 IMP tooth eruption
GO:0055074 IMP calcium ion homeostasis
GO:0070062 IDA extracellular vesicular exosome
GO:0070166 IMP enamel mineralization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079486 fam20a family with sequence similarity 20, member A protein_coding Danio_rerio
ENSDARG00000089427 FAM20A (2 of 2) family with sequence similarity 20, member A protein_coding Danio_rerio
ENSMUSG00000020614 Fam20a family with sequence similarity 20, member A protein_coding Mus_musculus

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