C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003AG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000012094-ENSDARG00000079486 CGP 7955 12:3448945-3531817
GeneTranscriptPositionBiotype
ENSDARG00000012094 (prkar1ab)
protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) b 		ENSDART00000005587 (prkar1ab-201) 3448945-3487535 protein_coding
ENSDART00000104804 (prkar1ab-001) 3448945-3474092 protein_coding
ENSDARG00000079486 (fam20a)
family with sequence similarity 20, member A 		ENSDART00000112182 (fam20a-001) 3498357-3531817 protein_coding
CIL_0003AG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108946-ENSG00000108950 CGP 9606 17:68511780-68601389
GeneTranscriptPositionBiotype
ENSG00000108946 (PRKAR1A)
protein kinase, cAMP-dependent, regulatory, type I, alpha 		ENST00000358598 (PRKAR1A-004) 68512032-68532762 protein_coding
ENST00000392710 (PRKAR1A-003) 68512450-68532759 nonsense_mediated_decay
ENST00000392711 (PRKAR1A-201) 68512379-68533423 protein_coding
ENST00000536854 (PRKAR1A-002) 68512450-68532762 protein_coding
ENST00000585427 (PRKAR1A-010) 68512416-68524046 protein_coding
ENST00000585460 (PRKAR1A-018) 68512430-68524130 retained_intron
ENST00000585608 (PRKAR1A-017) 68512426-68525912 nonsense_mediated_decay
ENST00000585815 (PRKAR1A-015) 68512921-68522774 protein_coding
ENST00000585907 (PRKAR1A-007) 68527584-68530319 retained_intron
ENST00000585981 (PRKAR1A-013) 68512882-68528992 protein_coding
ENST00000586397 (PRKAR1A-005) 68514821-68530664 protein_coding
ENST00000586541 (PRKAR1A-020) 68525882-68530461 nonsense_mediated_decay
ENST00000588178 (PRKAR1A-016) 68515123-68524956 protein_coding
ENST00000588188 (PRKAR1A-006) 68515400-68551319 protein_coding
ENST00000588702 (PRKAR1A-011) 68512467-68524078 protein_coding
ENST00000589017 (PRKAR1A-008) 68511780-68525818 protein_coding
ENST00000589228 (PRKAR1A-001) 68512427-68533431 protein_coding
ENST00000589309 (PRKAR1A-012) 68512487-68515536 protein_coding
ENST00000589480 (PRKAR1A-014) 68512900-68522917 protein_coding
ENST00000592194 (PRKAR1A-009) 68512415-68515815 retained_intron
ENST00000592800 (PRKAR1A-019) 68525795-68530654 protein_coding
ENSG00000108950 (FAM20A)
family with sequence similarity 20, member A 		ENST00000226094 (FAM20A-003) 68535113-68558390 processed_transcript
ENST00000375556 (FAM20A-006) 68537123-68541991 retained_intron
ENST00000590074 (FAM20A-002) 68537617-68600596 nonsense_mediated_decay
ENST00000590873 (FAM20A-005) 68537121-68543669 nonsense_mediated_decay
ENST00000592554 (FAM20A-001) 68536871-68601389 protein_coding
ENST00000592847 (FAM20A-004) 68540911-68558375 processed_transcript
ENST00000619787 (FAM20A-201) 68535117-68540577 protein_coding
ENSG00000267461 (RP11-120M18.5)
 ENST00000589826 (RP11-120M18.5-001) 68557516-68582577 lincRNA
ENSG00000267659 (LINC01482)
long intergenic non-protein coding RNA 1482 		ENST00000585484 (LINC01482-001) 68628154-68679606 lincRNA
ENST00000587999 (LINC01482-004) 68591796-68763882 lincRNA
ENST00000589610 (LINC01482-003) 68591839-68750552 lincRNA
ENST00000591754 (LINC01482-002) 68628103-68677166 lincRNA
CIL_0003AG_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020612-ENSMUSG00000020614 CGP 10090 11:109649405-109722279
GeneTranscriptPositionBiotype
ENSMUSG00000020612 (Prkar1a)
protein kinase, cAMP dependent regulatory, type I, alpha 		ENSMUST00000049527 (Prkar1a-001) 109650921-109669656 protein_coding
ENSMUST00000106676 (Prkar1a-004) 109650575-109661753 protein_coding
ENSMUST00000106677 (Prkar1a-002) 109649405-109669656 protein_coding
ENSMUST00000123354 (Prkar1a-003) 109649405-109653961 processed_transcript
ENSMUST00000155532 (Prkar1a-005) 109665944-109666976 processed_transcript
ENSMUSG00000020614 (Fam20a)
family with sequence similarity 20, member A 		ENSMUST00000020938 (Fam20a-001) 109672926-109722256 protein_coding
ENSMUST00000144972 (Fam20a-003) 109674639-109682979 retained_intron
ENSMUST00000146408 (Fam20a-002) 109673474-109676422 retained_intron
ENSMUST00000155559 (Fam20a-004) 109669749-109722279 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AG_0001ENSDARG00000012094ENSDART00000005587ENSDART00000104804ENSDARG00000079486ENSDART00000112182CIL_0003AG_0002ENSG00000108946ENST00000358598ENST00000392710ENST00000392711ENST00000536854ENST00000585427ENST00000585460ENST00000585608ENST00000585815ENST00000585907ENST00000585981ENST00000586397ENST00000586541ENST00000588178ENST00000588188ENST00000588702ENST00000589017ENST00000589228ENST00000589309ENST00000589480ENST00000592194ENST00000592800ENSG00000108950ENST00000226094ENST00000375556ENST00000590074ENST00000590873ENST00000592554ENST00000592847ENST00000619787ENSG00000267461ENST00000589826ENSG00000267659ENST00000585484ENST00000587999ENST00000589610ENST00000591754CIL_0003AG_0003ENSMUSG00000020612ENSMUST00000049527ENSMUST00000106676ENSMUST00000106677ENSMUST00000123354ENSMUST00000155532ENSMUSG00000020614ENSMUST00000020938ENSMUST00000144972ENSMUST00000146408ENSMUST00000155559
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003AG_0001ENSDARG00000012094ENSDART00000005587ENSDART00000104804ENSDARG00000079486ENSDART00000112182CIL_0003AG_0002ENSG00000108946ENST00000358598ENST00000392710ENST00000536854ENST00000585981ENST00000589228ENST00000592800ENSG00000108950ENST00000226094ENST00000375556ENST00000590074ENST00000590873ENST00000592554ENST00000592847ENST00000619787ENSG00000267461ENST00000589826ENSG00000267659ENST00000585484ENST00000587999ENST00000589610ENST00000591754CIL_0003AG_0003ENSMUSG00000020612ENSMUST00000049527ENSMUST00000106677ENSMUSG00000020614ENSMUST00000020938ENSMUST00000144972ENSMUST00000146408ENSMUST00000155559
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012094 ENSDART00000005587 N/A N/A N/A 4.461±1.13 N/A N/A 9.528±8.46 13.494±0.00 0.956±0.00 N/A 1.935±0.00 N/A N/A N/A
ENSDART00000104804 N/A N/A N/A 5.008±0.00 N/A N/A 1.299±0.03 6.443±0.00 0.338±0.00 N/A 0.429±0.00 N/A N/A N/A
ENSDARG00000079486 ENSDART00000112182 N/A N/A N/A 0.163±0.07 N/A N/A 0.978±0.15 N/A 3.255±0.00 N/A 0.368±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108946 ENST00000358598 36.475±0.00 20.576±0.00 34.511±0.00 67.067±3.24 24.211±3.95 33.175±4.73 64.369±19.36 32.941±11.79 17.794±5.13 39.109±23.62 55.394±48.40 52.957±9.81 28.746±0.95 50.497±0.00
ENST00000392710 117.513±0.00 32.616±0.00 10.425±0.00 36.545±16.25 61.621±0.00 43.605±0.00 30.283±6.64 22.875±15.78 10.142±1.81 26.879±5.28 42.885±0.00 20.765±3.57 21.038±8.31 39.059±18.53
ENST00000392711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536854 N/A N/A N/A N/A 20.820±0.00 N/A N/A N/A 43.991±0.00 31.396±0.00 N/A N/A N/A N/A
ENST00000585427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.534±0.00 66.251±0.00 133.844±0.00
ENST00000586397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589228 N/A N/A N/A 18.356±0.00 N/A N/A N/A N/A N/A 13.373±0.00 7.977±0.00 13.072±0.00 N/A N/A
ENST00000589309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.659±0.00 73.238±0.00 133.336±0.00
ENSG00000108950 ENST00000226094 N/A N/A 0.340±0.00 N/A N/A N/A N/A N/A 2.467±0.00 1.625±0.00 N/A 1.772±0.00 N/A N/A
ENST00000375556 N/A 2.460±0.00 0.315±0.00 0.172±0.00 0.889±0.00 0.389±0.00 0.445±0.00 6.781±0.00 4.922±0.00 6.682±0.00 0.231±0.00 1.153±0.00 1.241±0.00 5.099±2.66
ENST00000590074 N/A 2.758±0.00 0.699±0.00 N/A 0.885±0.00 0.563±0.00 N/A 3.284±0.00 N/A 1.524±0.00 N/A N/A N/A N/A
ENST00000590873 N/A N/A N/A 0.481±0.17 N/A 0.538±0.00 1.443±0.00 N/A 22.356±0.00 N/A N/A 3.513±0.00 N/A 7.265±0.00
ENST00000592554 3.852±0.00 6.597±0.00 N/A 0.207±0.07 1.500±0.85 0.498±0.00 1.359±0.00 8.663±4.97 18.552±0.00 8.373±0.00 0.456±0.00 3.599±4.03 7.138±0.73 4.488±1.16
ENST00000592847 N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A 0.689±0.00 N/A 0.531±0.00 N/A N/A N/A
ENST00000619787 N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A
ENSG00000267461 ENST00000589826 N/A 0.631±0.00 N/A 0.049±0.00 0.226±0.00 0.128±0.00 N/A 0.323±0.00 N/A N/A N/A N/A 0.100±0.00 0.105±0.00
ENSG00000267659 ENST00000585484 0.055±0.00 0.263±0.00 N/A 0.096±0.01 0.105±0.00 0.060±0.00 0.098±0.00 0.128±0.01 0.125±0.00 0.216±0.08 0.013±0.00 0.068±0.00 0.031±0.00 0.166±0.10
ENST00000587999 N/A 0.486±0.00 1.610±0.00 0.082±0.00 N/A N/A N/A 0.137±0.00 0.105±0.00 0.386±0.00 N/A 0.098±0.00 0.316±0.00 0.289±0.00
ENST00000589610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A 0.055±0.00
ENST00000591754 N/A N/A N/A N/A N/A N/A N/A N/A 0.235±0.00 N/A N/A 1.189±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020612 ENSMUST00000049527 54.070±17.60 209.442±10.25 77.576±9.17 83.003±5.48 73.579±29.13 52.130±8.60 70.242±7.16 63.574±4.25 42.792±3.63 104.368±7.67 19.171±2.06 100.313±17.57 37.177±9.38 38.296±6.66
ENSMUST00000106676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106677 11.878±0.00 N/A 11.007±0.00 28.087±17.72 N/A N/A 25.430±3.25 N/A N/A N/A 10.027±1.90 15.657±4.85 N/A N/A
ENSMUST00000123354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020614 ENSMUST00000020938 6.202±0.27 1.768±0.54 4.343±0.51 1.744±1.04 4.069±1.58 2.127±0.17 1.809±0.34 2.329±0.29 7.745±3.84 5.417±0.46 0.496±0.10 4.743±1.26 1.205±0.85 N/A
ENSMUST00000144972 N/A N/A N/A N/A 3.472±0.19 N/A N/A N/A N/A N/A 0.203±0.00 2.782±0.54 N/A N/A
ENSMUST00000146408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.401±1.19
ENSMUST00000155559 N/A 0.399±0.00 N/A 0.195±0.00 N/A 0.325±0.00 0.273±0.00 0.398±0.03 0.223±0.00 N/A 0.270±0.00 0.917±0.00 N/A N/A

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