C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 20, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592554 FAM20A-001 ENSG00000108950 9606 - 17:68536871-68601389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000592554
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000592554 3.852±0.00 6.597±0.00 0.207±0.07 1.500±0.85 0.498±0.00 1.359±0.00 8.663±4.97 18.552±0.00 8.373±0.00 0.456±0.00 3.599±4.03 7.138±0.73 4.488±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GP CIL_0006GP_0001 CGP 17:68420948-68551319
CIL_0003AG CIL_0003AG_0002 CGP 17:68511780-68601389

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005623 ISS cell
GO:0005794 IEA Golgi apparatus
GO:0044691 IMP tooth eruption
GO:0055074 IMP calcium ion homeostasis
GO:0070062 IDA extracellular vesicular exosome
GO:0070166 IMP enamel mineralization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020938 Fam20a-001 protein_coding Mus_musculus 0 1731
ENSMUST00000155559 Fam20a-004 nonsense_mediated_decay Mus_musculus 0 1731
ENSMUST00000144972 Fam20a-003 retained_intron Mus_musculus 0 662

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