C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 20, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020614 Fam20a 10090 - 11:109669749-109722279 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020938 Fam20a-001 109672926-109722256 protein_coding
  ENSMUST00000144972 Fam20a-003 109674639-109682979 retained_intron
  ENSMUST00000146408 Fam20a-002 109673474-109676422 retained_intron
  ENSMUST00000155559 Fam20a-004 109669749-109722279 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020938ENSMUST00000144972ENSMUST00000146408ENSMUST00000155559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020938 6.202±0.27 1.768±0.54 4.343±0.51 1.744±1.04 4.069±1.58 2.127±0.17 1.809±0.34 2.329±0.29 7.745±3.84 5.417±0.46 0.496±0.10 4.743±1.26 1.205±0.85 N/A
ENSMUST00000144972 N/A N/A N/A N/A 3.472±0.19 N/A N/A N/A N/A N/A 0.203±0.00 2.782±0.54 N/A N/A
ENSMUST00000146408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.401±1.19
ENSMUST00000155559 N/A 0.399±0.00 N/A 0.195±0.00 N/A 0.325±0.00 0.273±0.00 0.398±0.03 0.223±0.00 N/A 0.270±0.00 0.917±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AG CIL_0003AG_0003 CGP 11:109649405-109722279

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005623 IDA cell
GO:0005794 IDA Golgi apparatus
GO:0044691 IEA tooth eruption
GO:0055074 IEA calcium ion homeostasis
GO:0070062 IEA extracellular vesicular exosome
GO:0070166 IMP enamel mineralization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079486 fam20a family with sequence similarity 20, member A protein_coding Danio_rerio
ENSDARG00000089427 FAM20A (2 of 2) family with sequence similarity 20, member A protein_coding Danio_rerio
ENSG00000108950 FAM20A family with sequence similarity 20, member A protein_coding Homo_sapiens

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