C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 20, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590074 FAM20A-002 ENSG00000108950 9606 - 17:68537617-68600596 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLungENST00000590074
Transcript ID Adrenal Bladder Breast Colon Kidney Lung
ENST00000590074 2.758±0.00 0.699±0.00 0.885±0.00 0.563±0.00 3.284±0.00 1.524±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GP CIL_0006GP_0001 CGP 17:68420948-68551319
CIL_0003AG CIL_0003AG_0002 CGP 17:68511780-68601389

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020938 Fam20a-001 protein_coding Mus_musculus 0 1310
ENSMUST00000155559 Fam20a-004 nonsense_mediated_decay Mus_musculus 0 1310
ENSMUST00000144972 Fam20a-003 retained_intron Mus_musculus 0 662

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