C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006GP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070540-ENSG00000108946 CGP 9606 17:68420948-68551319
GeneTranscriptPositionBiotype
ENSG00000070540 (WIPI1)
WD repeat domain, phosphoinositide interacting 1 		ENST00000262139 (WIPI1-002) 68421282-68457421 protein_coding
ENST00000546360 (WIPI1-004) 68421514-68457479 protein_coding
ENST00000585393 (WIPI1-011) 68421486-68427175 protein_coding
ENST00000586815 (WIPI1-005) 68433509-68457513 processed_transcript
ENST00000587731 (WIPI1-007) 68428245-68430132 retained_intron
ENST00000589316 (WIPI1-001) 68421310-68457499 nonsense_mediated_decay
ENST00000589459 (WIPI1-003) 68421309-68457499 processed_transcript
ENST00000590402 (WIPI1-009) 68425926-68427569 retained_intron
ENST00000591494 (WIPI1-006) 68428877-68448440 processed_transcript
ENST00000591744 (WIPI1-010) 68425930-68433571 protein_coding
ENST00000592645 (WIPI1-012) 68420948-68427232 nonsense_mediated_decay
ENSG00000108946 (PRKAR1A)
protein kinase, cAMP-dependent, regulatory, type I, alpha 		ENST00000358598 (PRKAR1A-004) 68512032-68532762 protein_coding
ENST00000392710 (PRKAR1A-003) 68512450-68532759 nonsense_mediated_decay
ENST00000392711 (PRKAR1A-201) 68512379-68533423 protein_coding
ENST00000536854 (PRKAR1A-002) 68512450-68532762 protein_coding
ENST00000585427 (PRKAR1A-010) 68512416-68524046 protein_coding
ENST00000585460 (PRKAR1A-018) 68512430-68524130 retained_intron
ENST00000585608 (PRKAR1A-017) 68512426-68525912 nonsense_mediated_decay
ENST00000585815 (PRKAR1A-015) 68512921-68522774 protein_coding
ENST00000585907 (PRKAR1A-007) 68527584-68530319 retained_intron
ENST00000585981 (PRKAR1A-013) 68512882-68528992 protein_coding
ENST00000586397 (PRKAR1A-005) 68514821-68530664 protein_coding
ENST00000586541 (PRKAR1A-020) 68525882-68530461 nonsense_mediated_decay
ENST00000588178 (PRKAR1A-016) 68515123-68524956 protein_coding
ENST00000588188 (PRKAR1A-006) 68515400-68551319 protein_coding
ENST00000588702 (PRKAR1A-011) 68512467-68524078 protein_coding
ENST00000589017 (PRKAR1A-008) 68511780-68525818 protein_coding
ENST00000589228 (PRKAR1A-001) 68512427-68533431 protein_coding
ENST00000589309 (PRKAR1A-012) 68512487-68515536 protein_coding
ENST00000589480 (PRKAR1A-014) 68512900-68522917 protein_coding
ENST00000592194 (PRKAR1A-009) 68512415-68515815 retained_intron
ENST00000592800 (PRKAR1A-019) 68525795-68530654 protein_coding
ENSG00000108950 (FAM20A)
family with sequence similarity 20, member A 		ENST00000226094 (FAM20A-003) 68535113-68558390 processed_transcript
ENST00000375556 (FAM20A-006) 68537123-68541991 retained_intron
ENST00000590074 (FAM20A-002) 68537617-68600596 nonsense_mediated_decay
ENST00000590873 (FAM20A-005) 68537121-68543669 nonsense_mediated_decay
ENST00000592554 (FAM20A-001) 68536871-68601389 protein_coding
ENST00000592847 (FAM20A-004) 68540911-68558375 processed_transcript
ENST00000619787 (FAM20A-201) 68535117-68540577 protein_coding
ENSG00000207561 (MIR635)
microRNA 635 		ENST00000384830 (MIR635-201) 68424451-68424548 miRNA
CIL_0006GP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041895-ENSMUSG00000020612 CGP 10090 11:109573331-109669656
GeneTranscriptPositionBiotype
ENSMUSG00000020612 (Prkar1a)
protein kinase, cAMP dependent regulatory, type I, alpha 		ENSMUST00000049527 (Prkar1a-001) 109650921-109669656 protein_coding
ENSMUST00000106676 (Prkar1a-004) 109650575-109661753 protein_coding
ENSMUST00000106677 (Prkar1a-002) 109649405-109669656 protein_coding
ENSMUST00000123354 (Prkar1a-003) 109649405-109653961 processed_transcript
ENSMUST00000155532 (Prkar1a-005) 109665944-109666976 processed_transcript
ENSMUSG00000041895 (Wipi1)
WD repeat domain, phosphoinositide interacting 1 		ENSMUST00000047186 (Wipi1-002) 109575132-109611432 protein_coding
ENSMUST00000103060 (Wipi1-001) 109573331-109611432 protein_coding
ENSMUST00000106689 (Wipi1-003) 109582072-109611432 protein_coding
ENSMUST00000153738 (Wipi1-004) 109611239-109611967 processed_transcript
ENSMUSG00000086733 (Gm11685)
predicted gene 11685 		ENSMUST00000141559 (Gm11685-001) 109616320-109641789 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006GP_0001ENSG00000070540ENST00000262139ENSG00000108946ENST00000358598ENST00000392710ENST00000536854ENST00000585981ENST00000589228ENST00000592800ENSG00000108950ENST00000226094ENST00000375556ENST00000590074ENST00000590873ENST00000592554ENST00000592847ENST00000619787ENSG00000207561ENST00000384830CIL_0006GP_0002ENSMUSG00000020612ENSMUST00000049527ENSMUST00000106677ENSMUSG00000041895ENSMUST00000047186ENSMUST00000103060ENSMUST00000106689ENSMUSG00000086733ENSMUST00000141559
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070540 ENST00000262139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.061±0.00 N/A 33.574±2.03 N/A
ENST00000546360 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000108946 ENST00000358598 36.475±0.00 20.576±0.00 34.511±0.00 67.067±3.24 24.211±3.95 33.175±4.73 64.369±19.36 32.941±11.79 17.794±5.13 39.109±23.62 55.394±48.40 52.957±9.81 28.746±0.95 50.497±0.00
ENST00000392710 117.513±0.00 32.616±0.00 10.425±0.00 36.545±16.25 61.621±0.00 43.605±0.00 30.283±6.64 22.875±15.78 10.142±1.81 26.879±5.28 42.885±0.00 20.765±3.57 21.038±8.31 39.059±18.53
ENST00000392711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000536854 N/A N/A N/A N/A 20.820±0.00 N/A N/A N/A 43.991±0.00 31.396±0.00 N/A N/A N/A N/A
ENST00000585427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585815 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.534±0.00 66.251±0.00 133.844±0.00
ENST00000586397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586541 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589228 N/A N/A N/A 18.356±0.00 N/A N/A N/A N/A N/A 13.373±0.00 7.977±0.00 13.072±0.00 N/A N/A
ENST00000589309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.659±0.00 73.238±0.00 133.336±0.00
ENSG00000108950 ENST00000226094 N/A N/A 0.340±0.00 N/A N/A N/A N/A N/A 2.467±0.00 1.625±0.00 N/A 1.772±0.00 N/A N/A
ENST00000375556 N/A 2.460±0.00 0.315±0.00 0.172±0.00 0.889±0.00 0.389±0.00 0.445±0.00 6.781±0.00 4.922±0.00 6.682±0.00 0.231±0.00 1.153±0.00 1.241±0.00 5.099±2.66
ENST00000590074 N/A 2.758±0.00 0.699±0.00 N/A 0.885±0.00 0.563±0.00 N/A 3.284±0.00 N/A 1.524±0.00 N/A N/A N/A N/A
ENST00000590873 N/A N/A N/A 0.481±0.17 N/A 0.538±0.00 1.443±0.00 N/A 22.356±0.00 N/A N/A 3.513±0.00 N/A 7.265±0.00
ENST00000592554 3.852±0.00 6.597±0.00 N/A 0.207±0.07 1.500±0.85 0.498±0.00 1.359±0.00 8.663±4.97 18.552±0.00 8.373±0.00 0.456±0.00 3.599±4.03 7.138±0.73 4.488±1.16
ENST00000592847 N/A N/A N/A 0.533±0.00 N/A N/A N/A N/A 0.689±0.00 N/A 0.531±0.00 N/A N/A N/A
ENST00000619787 N/A 2.191±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A
ENSG00000207561 ENST00000384830 N/A N/A N/A N/A 0.452±0.00 0.625±0.00 1.896±0.00 3.737±0.00 0.620±0.00 0.811±0.00 N/A 21.138±0.00 4.725±3.77 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020612 ENSMUST00000049527 54.070±17.60 209.442±10.25 77.576±9.17 83.003±5.48 73.579±29.13 52.130±8.60 70.242±7.16 63.574±4.25 42.792±3.63 104.368±7.67 19.171±2.06 100.313±17.57 37.177±9.38 38.296±6.66
ENSMUST00000106676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000106677 11.878±0.00 N/A 11.007±0.00 28.087±17.72 N/A N/A 25.430±3.25 N/A N/A N/A 10.027±1.90 15.657±4.85 N/A N/A
ENSMUST00000123354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041895 ENSMUST00000047186 N/A 3.406±2.20 N/A N/A 4.917±1.90 2.110±0.00 N/A N/A 2.755±1.54 N/A 3.322±0.44 9.902±3.54 3.406±2.07 3.708±0.69
ENSMUST00000103060 11.849±2.71 7.897±1.48 13.510±0.09 2.300±1.88 5.592±0.95 3.350±0.71 20.263±3.51 3.877±1.48 5.382±4.88 5.070±0.49 21.682±1.59 11.861±6.06 11.536±9.29 10.814±2.54
ENSMUST00000106689 N/A N/A N/A N/A 9.091±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086733 ENSMUST00000141559 N/A N/A 0.012±0.00 0.010±0.00 N/A N/A N/A 0.045±0.01 N/A 0.039±0.00 0.041±0.00 0.022±0.00 N/A 0.052±0.03

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