C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cysteine-rich hydrophobic domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000109220 CHIC2 9606 - 4:54009789-54064690 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263921 CHIC2-001 54009789-54064690 protein_coding
  ENST00000509678 CHIC2-004 54048831-54064308 retained_intron
  ENST00000510894 CHIC2-005 54009979-54064298 protein_coding
  ENST00000512964 CHIC2-003 54009825-54064300 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263921ENST00000510894
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263921 4.275±0.00 5.917±0.00 1.141±0.00 1.166±0.00 3.135±0.70 3.049±1.68 1.730±0.61 2.759±0.02 2.911±0.83 7.238±0.00 1.574±0.96 5.525±0.21 12.574±7.19 22.235±4.23
ENST00000510894 N/A N/A N/A N/A 2.169±0.00 2.283±0.00 N/A 3.371±0.00 1.490±0.00 6.782±0.00 N/A 3.078±1.01 2.146±0.00 10.830±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272
CIL_0001CM CIL_0001CM_0001 CGP 4:53459301-54064690
CIL_0007R1 CIL_0007R1_0001 VISTA 4:53715055-54316288
CIL_0008IT CIL_0008IT_0001 VISTA 4:53795831-54396629
CIL_0007J9 CIL_0007J9_0001 UCNEbase 4:54001747-54096419
CIL_0001CN CIL_0001CN_0001 CGP 4:54009789-54102505

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005794 IEA Golgi apparatus
GO:0005798 IEA Golgi-associated vesicle
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022690 chic2 cysteine-rich hydrophobic domain 2 protein_coding Danio_rerio
ENSMUSG00000029229 Chic2 cysteine-rich hydrophobic domain 2 protein_coding Mus_musculus

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