C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001CL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000145216-ENSG00000145216 CGP 9606 4:53377643-54295272
GeneTranscriptPositionBiotype
ENSG00000072201 (LNX1)
ligand of numb-protein X 1, E3 ubiquitin protein ligase 		ENST00000263925 (LNX1-001) 53460456-53591616 protein_coding
ENST00000306888 (LNX1-002) 53459301-53558217 protein_coding
ENST00000504299 (LNX1-004) 53573984-53617501 protein_coding
ENST00000504605 (LNX1-005) 53574057-53652477 processed_transcript
ENST00000507168 (LNX1-008) 53573955-53652477 protein_coding
ENST00000510143 (LNX1-007) 53573704-53652513 protein_coding
ENST00000511398 (LNX1-010) 53498773-53508383 retained_intron
ENST00000512247 (LNX1-003) 53573731-53591765 protein_coding
ENST00000513421 (LNX1-006) 53573626-53701405 protein_coding
ENSG00000109220 (CHIC2)
cysteine-rich hydrophobic domain 2 		ENST00000263921 (CHIC2-001) 54009789-54064690 protein_coding
ENST00000509678 (CHIC2-004) 54048831-54064308 retained_intron
ENST00000510894 (CHIC2-005) 54009979-54064298 protein_coding
ENST00000512964 (CHIC2-003) 54009825-54064300 protein_coding
ENSG00000134853 (PDGFRA)
platelet-derived growth factor receptor, alpha polypeptide 		ENST00000257290 (PDGFRA-001) 54229097-54298247 protein_coding
ENST00000461294 (PDGFRA-005) 54276751-54278246 retained_intron
ENST00000503856 (PDGFRA-007) 54229843-54263776 protein_coding
ENST00000504461 (PDGFRA-006) 54230322-54263773 protein_coding
ENST00000507536 (PDGFRA-004) 54277176-54281977 retained_intron
ENST00000508170 (PDGFRA-002) 54229280-54265353 protein_coding
ENST00000509092 (PDGFRA-003) 54229292-54280758 retained_intron
ENST00000509490 (PDGFRA-008) 54229311-54281978 nonsense_mediated_decay
ENST00000512143 (PDGFRA-009) 54229293-54261412 protein_coding
ENST00000512522 (PDGFRA-010) 54243575-54263762 protein_coding
ENSG00000145216 (FIP1L1)
factor interacting with PAPOLA and CPSF1 		ENST00000306932 (FIP1L1-003) 53377696-53459621 protein_coding
ENST00000337488 (FIP1L1-001) 53377645-53459668 protein_coding
ENST00000358575 (FIP1L1-002) 53377645-53459668 protein_coding
ENST00000504094 (FIP1L1-010) 53428066-53460861 protein_coding
ENST00000505125 (FIP1L1-004) 53377803-53459621 retained_intron
ENST00000507166 (FIP1L1-005) 53377839-54295272 protein_coding
ENST00000507206 (FIP1L1-013) 53458551-53459402 retained_intron
ENST00000507922 (FIP1L1-009) 53377671-53428221 protein_coding
ENST00000510668 (FIP1L1-015) 53378218-53389849 processed_transcript
ENST00000511055 (FIP1L1-014) 53442253-53453131 retained_intron
ENST00000511376 (FIP1L1-012) 53377643-53390597 processed_transcript
ENST00000513008 (FIP1L1-008) 53425836-53459621 retained_intron
ENST00000513975 (FIP1L1-006) 53377843-53440983 retained_intron
ENST00000514543 (FIP1L1-011) 53382278-53459618 nonsense_mediated_decay
ENSG00000173966 (RP11-18M17.1)
 ENST00000513286 (RP11-18M17.1-001) 53575713-53576387 processed_pseudogene
ENSG00000180613 (GSX2)
GS homeobox 2 		ENST00000326902 (GSX2-001) 54100031-54102505 protein_coding
ENST00000503800 (GSX2-002) 54100173-54102227 protein_coding
ENST00000507839 (GSX2-004) 54099523-54101928 processed_transcript
ENST00000548609 (GSX2-003) 54100816-54102146 processed_transcript
ENST00000611459 (GSX2-201) 54100031-54101955 protein_coding
ENSG00000229585 (RPL21P44)
ribosomal protein L21 pseudogene 44 		ENST00000491826 (RPL21P44-001) 53986587-53987058 processed_pseudogene
ENSG00000242670 (RP11-601I15.1)
 ENST00000493291 (RP11-601I15.1-001) 54221126-54221472 processed_pseudogene
ENSG00000248494 (LNX1-AS2)
LNX1 antisense RNA 2 		ENST00000502410 (LNX1-AS2-002) 53592985-53594103 sense_intronic
ENST00000509974 (LNX1-AS2-001) 53592956-53604047 sense_intronic
ENSG00000249706 (RP11-89B16.1)
 ENST00000512405 (RP11-89B16.1-001) 53899871-53916835 sense_intronic
ENSG00000250147 (MORF4L2P1)
mortality factor 4 like 2 pseudogene 1 		ENST00000503761 (MORF4L2P1-001) 54086926-54087783 processed_pseudogene
ENSG00000250815 (RP11-89B16.2)
 ENST00000508433 (RP11-89B16.2-001) 53927499-53928138 processed_pseudogene
ENSG00000250930 (LNX1-AS1)
LNX1 antisense RNA 1 		ENST00000502373 (LNX1-AS1-003) 53496400-53500502 antisense
ENST00000510785 (LNX1-AS1-001) 53500078-53523274 antisense
ENST00000511989 (LNX1-AS1-002) 53501864-53549578 antisense
ENST00000514364 (LNX1-AS1-004) 53501891-53539348 antisense
ENSG00000251105 (RP11-571I18.2)
 ENST00000510278 (RP11-571I18.2-001) 54076625-54076848 processed_pseudogene
ENSG00000269506 (RP11-571I18.5)
 ENST00000595906 (RP11-571I18.5-001) 54059597-54061210 antisense
ENSG00000272650 (RP11-571I18.4)
 ENST00000609843 (RP11-571I18.4-001) 53997415-53997712 lincRNA
CIL_0001CL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029227-ENSMUSG00000029228 CGP 10090 5:74535449-74702911
GeneTranscriptPositionBiotype
ENSMUSG00000029227 (Fip1l1)
FIP1 like 1 (S. cerevisiae) 		ENSMUST00000080164 (Fip1l1-001) 74535449-74598790 protein_coding
ENSMUST00000113534 (Fip1l1-007) 74535524-74592430 protein_coding
ENSMUST00000113535 (Fip1l1-004) 74535497-74596145 protein_coding
ENSMUST00000113536 (Fip1l1-003) 74535482-74596148 protein_coding
ENSMUST00000120618 (Fip1l1-005) 74535493-74596206 protein_coding
ENSMUST00000121950 (Fip1l1-008) 74535548-74596206 protein_coding
ENSMUST00000122245 (Fip1l1-006) 74535485-74596119 protein_coding
ENSMUST00000125129 (Fip1l1-011) 74594743-74595916 retained_intron
ENSMUST00000135377 (Fip1l1-010) 74535485-74540566 retained_intron
ENSMUST00000139697 (Fip1l1-009) 74586803-74591990 retained_intron
ENSMUSG00000085657 (Gm15984)
predicted gene 15984 		ENSMUST00000155864 (Gm15984-002) 74703021-74713089 lincRNA
ENSMUST00000156466 (Gm15984-001) 74702599-74728605 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001CL_0001ENSG00000072201ENST00000263925ENST00000306888ENST00000504299ENST00000504605ENST00000507168ENST00000510143ENST00000511398ENST00000512247ENST00000513421ENSG00000109220ENST00000263921ENST00000509678ENST00000510894ENST00000512964ENSG00000134853ENST00000257290ENST00000461294ENST00000503856ENST00000504461ENST00000507536ENST00000508170ENST00000509092ENST00000509490ENST00000512143ENST00000512522ENSG00000145216ENST00000306932ENST00000337488ENST00000358575ENST00000504094ENST00000505125ENST00000507166ENST00000507206ENST00000507922ENST00000510668ENST00000511055ENST00000511376ENST00000513008ENST00000513975ENST00000514543ENSG00000173966ENST00000513286ENSG00000180613ENST00000326902ENST00000503800ENST00000507839ENST00000548609ENST00000611459ENSG00000229585ENST00000491826ENSG00000242670ENST00000493291ENSG00000248494ENST00000502410ENST00000509974ENSG00000249706ENST00000512405ENSG00000250147ENST00000503761ENSG00000250815ENST00000508433ENSG00000250930ENST00000502373ENST00000510785ENST00000511989ENST00000514364ENSG00000251105ENST00000510278ENSG00000269506ENST00000595906ENSG00000272650ENST00000609843CIL_0001CL_0002ENSMUSG00000029227ENSMUST00000080164ENSMUST00000113534ENSMUST00000113535ENSMUST00000113536ENSMUST00000120618ENSMUST00000121950ENSMUST00000122245ENSMUST00000125129ENSMUST00000135377ENSMUST00000139697ENSMUSG00000085657ENSMUST00000155864ENSMUST00000156466
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000072201 ENST00000263925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.572±2.02 N/A
ENST00000306888 N/A N/A N/A 10.660±3.63 N/A N/A N/A N/A N/A N/A 1.576±0.00 5.467±0.00 N/A N/A
ENST00000504299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000109220 ENST00000263921 4.275±0.00 5.917±0.00 1.141±0.00 1.166±0.00 3.135±0.70 3.049±1.68 1.730±0.61 2.759±0.02 2.911±0.83 7.238±0.00 1.574±0.96 5.525±0.21 12.574±7.19 22.235±4.23
ENST00000509678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510894 N/A N/A N/A N/A 2.169±0.00 2.283±0.00 N/A 3.371±0.00 1.490±0.00 6.782±0.00 N/A 3.078±1.01 2.146±0.00 10.830±0.00
ENST00000512964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000134853 ENST00000257290 N/A N/A 10.959±0.00 5.721±1.62 8.378±0.00 12.411±4.75 4.723±1.61 4.446±0.00 22.616±0.00 13.010±8.31 1.719±0.49 26.966±8.20 12.258±4.37 5.769±0.00
ENST00000461294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503856 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.565±0.00 N/A N/A N/A
ENST00000509490 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.526±0.00 N/A N/A N/A N/A
ENST00000512143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000145216 ENST00000306932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.805±0.00 12.019±0.00
ENST00000337488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.547±0.00
ENST00000358575 N/A N/A N/A 5.688±0.00 N/A N/A N/A 4.019±0.00 N/A N/A N/A N/A N/A N/A
ENST00000504094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.973±0.00 N/A N/A 29.238±0.00
ENST00000510668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513008 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173966 ENST00000513286 N/A N/A N/A N/A N/A 0.065±0.03 0.071±0.00 N/A N/A 0.896±0.00 N/A 0.226±0.00 N/A 0.035±0.00
ENSG00000180613 ENST00000326902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENST00000503800 N/A N/A N/A 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00
ENST00000507839 N/A N/A N/A 0.148±0.00 N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A N/A
ENST00000548609 N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A N/A N/A 0.277±0.00
ENST00000611459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229585 ENST00000491826 N/A 0.504±0.00 0.276±0.00 0.486±0.21 0.499±0.14 N/A 0.186±0.00 0.333±0.00 0.335±0.28 0.259±0.21 0.384±0.00 0.202±0.10 0.123±0.01 0.203±0.15
ENSG00000242670 ENST00000493291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.093±0.00
ENSG00000248494 ENST00000502410 N/A 0.040±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.02 0.074±0.00 0.282±0.00
ENST00000509974 N/A 0.064±0.00 0.103±0.00 0.067±0.00 0.042±0.00 N/A 0.099±0.00 0.422±0.00 N/A N/A N/A 0.164±0.10 0.103±0.05 0.193±0.00
ENSG00000249706 ENST00000512405 0.034±0.00 0.035±0.00 N/A 0.092±0.00 0.036±0.00 0.131±0.00 0.078±0.00 0.282±0.00 N/A 0.185±0.14 0.075±0.00 0.097±0.05 0.104±0.03 0.036±0.00
ENSG00000250147 ENST00000503761 N/A 0.032±0.00 N/A 0.033±0.00 N/A 0.015±0.00 0.015±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00
ENSG00000250815 ENST00000508433 0.281±0.00 1.488±0.00 N/A 0.178±0.01 0.691±0.00 N/A N/A N/A 0.105±0.00 0.369±0.00 N/A 0.051±0.02 0.065±0.00 0.084±0.06
ENSG00000250930 ENST00000502373 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.427±0.00 N/A N/A N/A N/A
ENST00000510785 N/A N/A N/A 0.645±0.00 N/A 0.639±0.00 N/A 0.134±0.00 N/A N/A N/A 0.142±0.00 N/A 0.439±0.00
ENST00000511989 N/A N/A N/A 0.056±0.00 N/A N/A 0.076±0.00 0.677±0.00 N/A N/A N/A N/A N/A 6.550±5.59
ENST00000514364 N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 1.212±0.00 N/A N/A N/A N/A N/A
ENSG00000251105 ENST00000510278 N/A N/A N/A N/A N/A N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000269506 ENST00000595906 0.042±0.00 0.154±0.00 1.946±0.00 0.041±0.02 0.557±0.51 0.969±0.00 0.166±0.16 0.222±0.19 0.569±0.00 0.854±0.82 0.073±0.00 0.230±0.30 N/A N/A
ENSG00000272650 ENST00000609843 0.293±0.00 0.724±0.00 1.955±0.00 2.943±0.00 0.468±0.00 2.054±0.00 0.314±0.00 0.437±0.00 0.123±0.00 3.213±2.80 N/A 1.244±0.94 0.184±0.02 0.427±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029227 ENSMUST00000080164 3.664±0.47 2.747±0.97 6.029±0.16 10.895±4.42 2.778±0.66 3.692±0.73 2.302±0.37 3.360±0.47 3.892±1.42 4.353±1.30 1.465±0.59 4.893±2.66 3.444±0.65 1.392±0.00
ENSMUST00000113534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.508±0.00
ENSMUST00000113535 N/A N/A N/A 12.192±0.00 2.981±0.00 N/A 1.891±0.00 N/A 5.331±3.42 N/A 2.691±0.00 27.077±0.00 14.889±10.04 4.104±0.55
ENSMUST00000113536 5.055±0.38 N/A 4.589±0.56 10.155±0.00 2.492±0.00 N/A 2.827±1.21 2.640±0.53 5.449±2.67 3.468±0.59 3.266±0.72 9.539±4.57 10.251±3.05 4.469±1.19
ENSMUST00000120618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.279±0.00 9.135±0.00 2.833±0.24
ENSMUST00000122245 N/A 6.794±1.60 N/A N/A 4.046±0.58 5.491±0.93 N/A 3.460±0.77 3.511±0.74 3.841±0.34 N/A 8.425±3.36 7.144±0.00 N/A
ENSMUST00000125129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.815±0.00
ENSMUST00000135377 N/A 2.128±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00
ENSMUST00000139697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.346±0.00 N/A N/A
ENSMUSG00000085657 ENSMUST00000155864 N/A N/A N/A N/A 0.219±0.00 N/A N/A 0.149±0.03 0.044±0.00 N/A N/A 0.557±0.00 0.540±0.15 0.898±0.00
ENSMUST00000156466 0.172±0.09 0.055±0.00 0.595±0.09 N/A 0.154±0.05 N/A 0.061±0.00 0.062±0.04 0.006±0.00 0.031±0.00 0.093±0.05 0.124±0.09 0.023±0.02 0.026±0.01

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