C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cysteine-rich hydrophobic domain 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263921 CHIC2-001 ENSG00000109220 9606 - 4:54009789-54064690 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263921 4.275±0.00 5.917±0.00 1.141±0.00 1.166±0.00 3.135±0.70 3.049±1.68 1.730±0.61 2.759±0.02 2.911±0.83 7.238±0.00 1.574±0.96 5.525±0.21 12.574±7.19 22.235±4.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272
CIL_0001CM CIL_0001CM_0001 CGP 4:53459301-54064690
CIL_0007R1 CIL_0007R1_0001 VISTA 4:53715055-54316288
CIL_0008IT CIL_0008IT_0001 VISTA 4:53795831-54396629
CIL_0007J9 CIL_0007J9_0001 UCNEbase 4:54001747-54096419
CIL_0001CN CIL_0001CN_0001 CGP 4:54009789-54102505

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005794 IEA Golgi apparatus
GO:0005798 IEA Golgi-associated vesicle
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075452 Chic2-001 protein_coding Mus_musculus 0 1314
ENSMUST00000162397 Chic2-002 retained_intron Mus_musculus 0 209

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