C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coronin, actin binding protein, 1C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421578 CORO1C-009 ENSG00000110880 9606 - 12:108647380-108696402 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLungOvaryENST00000421578
Transcript ID Brain Breast Colon Heart Kidney Lung Ovary
ENST00000421578 4.451±0.00 6.412±0.00 5.078±0.00 1.205±0.00 3.040±0.00 6.057±0.00 7.310±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001VQ CIL_0001VQ_0001 CGP 12:108622277-108731596
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0015629 IEA actin cytoskeleton
GO:0030036 IEA actin cytoskeleton organization
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004646 Coro1c-001 protein_coding Mus_musculus 0 1539
ENSMUST00000163995 Coro1c-008 retained_intron Mus_musculus 0 990
ENSMUST00000166647 Coro1c-006 processed_transcript Mus_musculus 0 826
ENSMUST00000164980 Coro1c-002 nonsense_mediated_decay Mus_musculus 0 813
ENSMUST00000168634 Coro1c-009 retained_intron Mus_musculus 0 710
ENSMUST00000168493 Coro1c-007 processed_transcript Mus_musculus 0 590
ENSMUST00000172016 Coro1c-011 retained_intron Mus_musculus 0 235
ENSMUST00000060680 2010001K21Rik-201 pseudogene Mus_musculus 4e-23 113
ENSMUST00000163264 Coro1c-004 protein_coding Mus_musculus 5e-17 94

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