C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261653 STX2-001 ENSG00000111450 9606 - 12:130789600-130839266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261653
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261653 3.938±0.00 3.485±0.00 1.839±0.67 3.484±1.86 3.693±2.86 1.745±1.15 3.743±0.00 3.295±0.00 2.254±1.04 0.993±0.77 3.757±2.08 2.819±0.86 6.831±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042T CIL_00042T_0001 CGP 12:130396137-130839266
CIL_000430 CIL_000430_0001 CGP 12:130789600-130877678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0006886 IEA intracellular protein transport
GO:0007165 TAS signal transduction
GO:0007340 ISS acrosome reaction
GO:0007398 TAS ectoderm development
GO:0009887 TAS organ morphogenesis
GO:0010468 IMP regulation of gene expression
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016323 IDA basolateral plasma membrane
GO:0030193 IMP regulation of blood coagulation
GO:0043231 TAS intracellular membrane-bounded organelle
GO:0048306 ISS calcium-dependent protein binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100680 Stx2-002 protein_coding Mus_musculus 0 941
ENSMUST00000031378 Stx2-001 protein_coding Mus_musculus 0 861
ENSMUST00000151712 Stx2-003 retained_intron Mus_musculus 0 752
ENSMUST00000141492 Stx2-004 processed_transcript Mus_musculus 0 728

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