C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TK_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020606-ENSDARG00000017844 CGP 7955 23:36360868-36405650
GeneTranscriptPositionBiotype
ENSDARG00000017844 (copz1)
coatomer protein complex, subunit zeta 1 		ENSDART00000011201 (copz1-001) 36392064-36405650 protein_coding
ENSDARG00000036675 (hnrnpa1b)
heterogeneous nuclear ribonucleoprotein A1b 		ENSDART00000053267 (hnrnpa1b-001) 36358083-36361161 protein_coding
ENSDART00000127174 (hnrnpa1b-002) 36359205-36361962 nonsense_mediated_decay
ENSDART00000131711 (hnrnpa1b-004) 36360261-36361113 protein_coding
ENSDART00000134607 (hnrnpa1b-003) 36359972-36361959 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002TK_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000123405-ENSG00000111481 CGP 9606 12:54292111-54351849
GeneTranscriptPositionBiotype
ENSG00000111481 (COPZ1)
coatomer protein complex, subunit zeta 1 		ENST00000262061 (COPZ1-001) 54325127-54351849 protein_coding
ENST00000455864 (COPZ1-004) 54325139-54350913 protein_coding
ENST00000548076 (COPZ1-007) 54301220-54343279 processed_transcript
ENST00000548281 (COPZ1-013) 54325202-54350578 processed_transcript
ENST00000548753 (COPZ1-014) 54325584-54350686 protein_coding
ENST00000549043 (COPZ1-002) 54325129-54351102 protein_coding
ENST00000549116 (COPZ1-012) 54325144-54350879 protein_coding
ENST00000550027 (COPZ1-016) 54325139-54348132 retained_intron
ENST00000550171 (COPZ1-003) 54325139-54351082 nonsense_mediated_decay
ENST00000550713 (COPZ1-015) 54340372-54347840 protein_coding
ENST00000551412 (COPZ1-011) 54325139-54347972 retained_intron
ENST00000551779 (COPZ1-005) 54325151-54350621 protein_coding
ENST00000551962 (COPZ1-009) 54325131-54350590 nonsense_mediated_decay
ENST00000552218 (COPZ1-010) 54325131-54350690 protein_coding
ENST00000552362 (COPZ1-017) 54325139-54350590 protein_coding
ENST00000552848 (COPZ1-006) 54301202-54345475 protein_coding
ENST00000553009 (COPZ1-008) 54325109-54342630 retained_intron
ENST00000553231 (COPZ1-018) 54325139-54350354 protein_coding
ENSG00000123405 (NFE2)
nuclear factor, erythroid 2 		ENST00000312156 (NFE2-003) 54292111-54295760 protein_coding
ENST00000435572 (NFE2-001) 54292111-54301121 protein_coding
ENST00000540264 (NFE2-004) 54292173-54295758 protein_coding
ENST00000553070 (NFE2-002) 54292374-54301015 protein_coding
ENST00000553198 (NFE2-005) 54292465-54297884 protein_coding
ENSG00000199122 (MIR148B)
microRNA 148b 		ENST00000362252 (MIR148B-201) 54337208-54337316 miRNA
ENSG00000258344 (RP11-968A15.8)
 ENST00000553061 (RP11-968A15.8-001) 54276631-54345083 sense_overlapping
ENSG00000264028 (RN7SL744P)
RNA, 7SL, cytoplasmic 744, pseudogene 		ENST00000577604 (RN7SL744P-201) 54344610-54344876 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002TK_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000058794-ENSMUSG00000060992 CGP 10090 15:103248212-103299862
GeneTranscriptPositionBiotype
ENSMUSG00000058794 (Nfe2)
nuclear factor, erythroid derived 2 		ENSMUST00000075192 (Nfe2-001) 103248212-103255439 protein_coding
ENSMUST00000131364 (Nfe2-010) 103249007-103254062 protein_coding
ENSMUST00000132438 (Nfe2-006) 103249349-103258403 protein_coding
ENSMUST00000132836 (Nfe2-009) 103249069-103251687 protein_coding
ENSMUST00000133600 (Nfe2-003) 103248217-103251465 protein_coding
ENSMUST00000134193 (Nfe2-007) 103248955-103253152 protein_coding
ENSMUST00000134554 (Nfe2-004) 103248275-103251515 protein_coding
ENSMUST00000149111 (Nfe2-002) 103248220-103251676 protein_coding
ENSMUST00000154510 (Nfe2-008) 103249239-103252810 protein_coding
ENSMUST00000156927 (Nfe2-005) 103248217-103251516 protein_coding
ENSMUSG00000060992 (Copz1)
coatomer protein complex, subunit zeta 1 		ENSMUST00000100162 (Copz1-201) 103272911-103299862 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TK_0001ENSDARG00000017844ENSDART00000011201ENSDARG00000036675ENSDART00000053267ENSDART00000127174ENSDART00000131711ENSDART00000134607CIL_0002TK_0002ENSG00000111481ENST00000262061ENST00000455864ENST00000548076ENST00000548281ENST00000548753ENST00000549043ENST00000549116ENST00000550027ENST00000550171ENST00000550713ENST00000551412ENST00000551779ENST00000551962ENST00000552218ENST00000552362ENST00000552848ENST00000553009ENST00000553231ENSG00000123405ENST00000312156ENST00000435572ENST00000540264ENST00000553070ENST00000553198ENSG00000199122ENST00000362252ENSG00000258344ENST00000553061ENSG00000264028ENST00000577604CIL_0002TK_0003ENSMUSG00000058794ENSMUST00000075192ENSMUST00000131364ENSMUST00000132438ENSMUST00000132836ENSMUST00000133600ENSMUST00000134193ENSMUST00000134554ENSMUST00000149111ENSMUST00000154510ENSMUST00000156927ENSMUSG00000060992ENSMUST00000100162
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TK_0001ENSDARG00000017844ENSDART00000011201ENSDARG00000036675ENSDART00000053267ENSDART00000127174CIL_0002TK_0002ENSG00000111481ENST00000262061ENST00000455864ENST00000548753ENST00000549043ENST00000549116ENST00000550027ENST00000550171ENST00000550713ENST00000552362ENSG00000123405ENST00000312156ENST00000435572ENST00000553070ENST00000553198ENSG00000199122ENST00000362252ENSG00000258344ENST00000553061ENSG00000264028ENST00000577604CIL_0002TK_0003ENSMUSG00000058794ENSMUST00000075192ENSMUST00000131364ENSMUST00000132836ENSMUST00000133600ENSMUST00000134193ENSMUST00000134554ENSMUST00000149111ENSMUST00000154510ENSMUST00000156927ENSMUSG00000060992ENSMUST00000100162
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017844 ENSDART00000011201 N/A N/A N/A 54.542±18.91 N/A N/A 20.471±14.36 16.794±20.58 5.978±0.00 N/A 7.812±0.00 N/A N/A N/A
ENSDARG00000036675 ENSDART00000053267 N/A N/A N/A 33.276±26.60 N/A N/A 63.031±33.77 156.518±0.00 10.265±0.00 N/A 14.757±0.00 N/A N/A N/A
ENSDART00000127174 N/A N/A N/A 27.619±0.00 N/A N/A 68.658±7.75 98.164±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000131711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000111481 ENST00000262061 24.350±0.00 39.988±0.00 3.299±0.00 17.147±12.32 18.590±16.26 18.257±11.30 10.919±8.81 22.921±18.02 17.406±15.25 23.377±20.48 15.338±9.16 37.722±23.55 57.473±19.17 24.683±14.14
ENST00000455864 N/A N/A 6.142±0.00 11.266±0.00 8.344±0.00 10.218±0.00 5.632±0.00 4.215±0.00 14.008±0.00 3.112±0.00 10.035±0.00 14.702±9.07 21.895±4.75 13.160±0.00
ENST00000548076 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.894±0.00
ENST00000549043 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.730±0.00 N/A N/A N/A N/A
ENST00000549116 N/A N/A N/A N/A N/A N/A 15.582±0.00 25.441±0.00 32.886±0.00 N/A 11.855±0.00 N/A N/A N/A
ENST00000550027 N/A N/A N/A N/A N/A N/A N/A 10.413±0.00 N/A 9.002±0.00 3.834±0.00 18.485±12.53 39.569±0.00 14.528±0.00
ENST00000550171 8.533±0.00 N/A N/A N/A N/A 10.528±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550713 N/A N/A N/A N/A 6.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551412 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551962 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552362 N/A N/A N/A N/A N/A N/A 2.441±0.00 N/A N/A N/A N/A 38.106±0.00 47.606±0.00 9.867±0.00
ENST00000552848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553231 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000123405 ENST00000312156 N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A 1.563±0.00 N/A N/A 0.952±0.49 N/A
ENST00000435572 0.787±0.00 N/A N/A 0.144±0.00 0.371±0.00 N/A 0.195±0.13 N/A 0.448±0.12 5.360±4.40 N/A 0.164±0.00 2.235±0.60 0.836±0.19
ENST00000540264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553070 0.342±0.00 N/A N/A 0.187±0.00 N/A 0.351±0.00 N/A 0.165±0.00 0.073±0.00 N/A N/A 0.241±0.09 N/A N/A
ENST00000553198 0.351±0.00 0.053±0.00 0.352±0.00 N/A 0.098±0.00 0.127±0.00 N/A N/A N/A 0.314±0.00 0.385±0.00 0.108±0.00 N/A N/A
ENSG00000199122 ENST00000362252 N/A N/A N/A N/A 0.580±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258344 ENST00000553061 0.040±0.00 0.519±0.00 N/A 0.020±0.00 0.057±0.00 0.018±0.00 0.110±0.02 0.097±0.00 0.017±0.00 0.732±0.00 0.070±0.00 0.294±0.15 0.086±0.00 0.027±0.01
ENSG00000264028 ENST00000577604 0.073±0.00 0.460±0.00 N/A 0.524±0.00 0.921±0.84 0.072±0.00 0.217±0.00 0.805±0.00 N/A 0.153±0.00 0.960±0.00 0.722±0.47 0.131±0.00 0.276±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000058794 ENSMUST00000075192 1.147±0.68 0.343±0.13 0.055±0.00 0.102±0.06 0.803±0.18 0.323±0.14 0.379±0.07 0.203±0.03 50.877±61.15 4.292±0.81 N/A 0.659±0.21 2.823±2.25 0.494±0.11
ENSMUST00000131364 N/A N/A N/A 0.041±0.00 0.585±0.20 N/A N/A N/A N/A N/A N/A 0.416±0.10 N/A N/A
ENSMUST00000132438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132836 N/A N/A N/A 0.075±0.00 0.795±0.00 0.339±0.04 N/A 0.126±0.00 N/A N/A N/A 0.143±0.00 N/A N/A
ENSMUST00000133600 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 1.323±0.00 N/A
ENSMUST00000134193 0.128±0.00 N/A N/A N/A 0.321±0.01 0.322±0.00 N/A N/A 0.846±0.33 N/A N/A 0.259±0.00 1.430±0.00 N/A
ENSMUST00000134554 N/A 0.073±0.02 0.054±0.00 N/A 0.211±0.07 N/A N/A 0.071±0.01 N/A N/A 0.015±0.00 0.198±0.14 N/A N/A
ENSMUST00000149111 N/A N/A N/A N/A N/A N/A 0.144±0.04 N/A N/A N/A N/A 0.126±0.02 0.769±0.32 N/A
ENSMUST00000154510 N/A N/A N/A N/A N/A N/A 0.302±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156927 N/A 0.234±0.00 N/A N/A N/A 0.111±0.00 N/A N/A 0.345±0.06 N/A N/A 0.389±0.14 1.797±0.00 0.570±0.09
ENSMUSG00000060992 ENSMUST00000100162 64.231±7.93 43.263±3.38 58.294±5.93 46.852±19.98 53.126±19.22 51.470±3.66 25.401±1.29 63.214±3.76 95.600±21.28 42.000±2.62 19.538±1.31 55.795±6.34 69.862±15.26 22.718±8.02

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