C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: host cell factor C2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000111727 HCFC2 9606 + 12:104064457-104106524 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000229330 HCFC2-001 104064457-104106524 protein_coding
  ENST00000544223 HCFC2-002 104064542-104103466 nonsense_mediated_decay
  ENST00000547194 HCFC2-003 104080433-104082756 retained_intron
  ENST00000550335 HCFC2-005 104090923-104103301 processed_transcript
  ENST00000550444 HCFC2-004 104064814-104079473 protein_coding
  ENST00000552343 HCFC2-006 104098124-104103407 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229330ENST00000544223ENST00000550444
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229330 1.814±0.00 0.490±0.00 1.070±0.00 1.969±0.89 2.014±1.09 2.348±0.09 1.026±0.22 2.114±0.23 1.971±1.75 2.110±1.41 1.717±0.94 1.394±0.62 0.906±0.14 3.405±0.30
ENST00000544223 1.345±0.00 N/A 1.666±0.00 1.794±0.00 1.799±0.23 1.735±0.25 1.262±0.00 1.553±0.00 2.189±1.40 1.776±0.65 1.574±0.00 1.247±0.00 0.623±0.13 15.693±3.08
ENST00000550444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.368±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S8 CIL_0002S8_0001 CGP 12:103988984-104106524
CIL_0002SA CIL_0002SA_0001 CGP 12:104064457-104138289

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003713 TAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016032 TAS viral process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058127 hcfc2 host cell factor C2 protein_coding Danio_rerio
ENSMUSG00000020246 Hcfc2 host cell factor C2 protein_coding Mus_musculus

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