C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: host cell factor C2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020246 Hcfc2 10090 + 10:82696160-82742428 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020478 Hcfc2-001 82699007-82742428 protein_coding
  ENSMUST00000160681 Hcfc2-002 82728349-82741395 protein_coding
  ENSMUST00000160845 Hcfc2-003 82696160-82709057 processed_transcript
  ENSMUST00000162422 Hcfc2-004 82699211-82712230 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020478ENSMUST00000160681ENSMUST00000160845
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020478 2.526±0.14 2.313±1.14 4.083±1.06 7.768±0.50 4.011±0.70 1.231±0.15 2.570±0.94 1.778±0.60 1.846±1.00 1.640±0.63 2.206±0.64 2.741±1.22 5.255±0.62 11.151±4.53
ENSMUST00000160681 2.174±0.04 2.026±0.00 2.293±0.76 4.067±1.58 2.482±0.01 N/A 1.759±0.50 1.078±0.19 1.710±1.01 N/A 1.218±0.51 2.581±0.52 2.597±1.39 1.506±0.00
ENSMUST00000160845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.151±0.00 N/A 129.088±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S8 CIL_0002S8_0002 CGP 10:82650433-82742428
CIL_0002SA CIL_0002SA_0002 CGP 10:82696160-82764144

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058127 hcfc2 host cell factor C2 protein_coding Danio_rerio
ENSG00000111727 HCFC2 host cell factor C2 protein_coding Homo_sapiens

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