C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: host cell factor C2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000229330 HCFC2-001 ENSG00000111727 9606 + 12:104064457-104106524 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000229330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000229330 1.814±0.00 0.490±0.00 1.070±0.00 1.969±0.89 2.014±1.09 2.348±0.09 1.026±0.22 2.114±0.23 1.971±1.75 2.110±1.41 1.717±0.94 1.394±0.62 0.906±0.14 3.405±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S8 CIL_0002S8_0001 CGP 12:103988984-104106524
CIL_0002SA CIL_0002SA_0001 CGP 12:104064457-104138289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003713 TAS transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0016032 TAS viral process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020478 Hcfc2-001 protein_coding Mus_musculus 0 1823
ENSMUST00000160681 Hcfc2-002 protein_coding Mus_musculus 0 1114
ENSMUST00000162422 Hcfc2-004 nonsense_mediated_decay Mus_musculus 0 592
ENSMUST00000160845 Hcfc2-003 processed_transcript Mus_musculus 0 534

Loading