C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: host cell factor C2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000544223 HCFC2-002 ENSG00000111727 9606 + 12:104064542-104103466 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000544223
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000544223 1.345±0.00 1.666±0.00 1.794±0.00 1.799±0.23 1.735±0.25 1.262±0.00 1.553±0.00 2.189±1.40 1.776±0.65 1.574±0.00 1.247±0.00 0.623±0.13 15.693±3.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002S8 CIL_0002S8_0001 CGP 12:103988984-104106524
CIL_0002SA CIL_0002SA_0001 CGP 12:104064457-104138289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020478 Hcfc2-001 protein_coding Mus_musculus 0 1694
ENSMUST00000160681 Hcfc2-002 protein_coding Mus_musculus 0 1074
ENSMUST00000162422 Hcfc2-004 nonsense_mediated_decay Mus_musculus 0 592
ENSMUST00000160845 Hcfc2-003 processed_transcript Mus_musculus 0 534

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