C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin 6, type 2, K-cadherin (fetal kidney)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000113361 CDH6 9606 + 5:31193750-31329146 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265071 CDH6-001 31193750-31329146 protein_coding
  ENST00000504835 CDH6-005 31316250-31319042 retained_intron
  ENST00000506396 CDH6-002 31193769-31251854 retained_intron
  ENST00000508132 CDH6-004 31294199-31302442 retained_intron
  ENST00000514738 CDH6-003 31193750-31318346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265071ENST00000504835ENST00000514738
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265071 0.632±0.00 0.538±0.00 2.355±0.00 1.165±0.25 1.003±0.51 0.478±0.20 0.460±0.00 2.033±1.99 0.690±0.62 0.996±0.31 0.177±0.09 0.882±0.35 0.449±0.32 0.580±0.54
ENST00000504835 N/A N/A N/A N/A N/A N/A N/A 5.211±0.00 N/A N/A 0.119±0.00 N/A 0.076±0.00 0.043±0.00
ENST00000514738 0.790±0.00 0.551±0.00 N/A 1.377±0.00 0.512±0.00 0.546±0.00 0.344±0.01 0.102±0.00 N/A 0.448±0.00 N/A 0.494±0.00 0.593±0.38 0.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0003 CGP 5:26880600-31329146
CIL_0008PA CIL_0008PA_0001 VISTA 5:30691085-31296140
CIL_0008DF CIL_0008DF_0001 VISTA 5:30694176-31295940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014522 cdh6 cadherin 6 protein_coding Danio_rerio
ENSDARG00000055843 cdh10 cadherin 10, type 2 (T2-cadherin) protein_coding Danio_rerio
ENSDARG00000091395 CABZ01067945.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000039385 Cdh6 cadherin 6 protein_coding Mus_musculus

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