C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 6, type 2, K-cadherin (fetal kidney)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265071 CDH6-001 ENSG00000113361 9606 + 5:31193750-31329146 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265071
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265071 0.632±0.00 0.538±0.00 2.355±0.00 1.165±0.25 1.003±0.51 0.478±0.20 0.460±0.00 2.033±1.99 0.690±0.62 0.996±0.31 0.177±0.09 0.882±0.35 0.449±0.32 0.580±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0003 CGP 5:26880600-31329146
CIL_0008PA CIL_0008PA_0001 VISTA 5:30691085-31296140
CIL_0008DF CIL_0008DF_0001 VISTA 5:30694176-31295940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 TAS plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0045216 TAS cell-cell junction organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036439 Cdh6-201 protein_coding Mus_musculus 0 3267
ENSMUST00000176146 Cdh10-003 nonsense_mediated_decay Mus_musculus 0 501
ENSMUST00000040562 Cdh10-002 protein_coding Mus_musculus 0 501
ENSMUST00000166873 Cdh10-001 protein_coding Mus_musculus 0 501
ENSMUST00000176593 Cdh10-005 retained_intron Mus_musculus 0 477
ENSMUST00000176409 Cdh10-006 retained_intron Mus_musculus 0 375

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