C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chemokine (C-C motif) ligand 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115009 CCL20 9606 + 2:227813842-227817564 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358813 CCL20-004 227813854-227817534 protein_coding
  ENST00000409189 CCL20-001 227813842-227817564 protein_coding
  ENST00000473642 CCL20-003 227815369-227817463 processed_transcript
  ENST00000489160 CCL20-002 227813843-227815984 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000358813ENST00000409189ENST00000473642ENST00000489160
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000358813 N/A 2.056±0.00 N/A N/A 0.431±0.00 N/A 1.677±0.00 0.245±0.07 10.247±8.07 14.294±12.75 0.504±0.00 N/A
ENST00000409189 0.115±0.00 0.367±0.00 0.059±0.00 1.146±0.00 0.971±0.00 N/A N/A N/A 4.854±2.97 16.612±3.29 0.293±0.00 0.254±0.00
ENST00000473642 0.244±0.00 0.338±0.00 0.071±0.00 N/A N/A 0.040±0.00 N/A 0.273±0.00 N/A 14.944±0.00 0.196±0.05 0.173±0.00
ENST00000489160 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A 3.433±3.40 N/A 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0001 CGP 2:227813842-227924344

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005125 IEA cytokine activity
GO:0005515 IPI protein binding
GO:0005576 TAS:IEA extracellular region
GO:0005615 IEA extracellular space
GO:0006935 TAS chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0008009 IEA chemokine activity
GO:0042060 IEA wound healing
GO:0042742 IEA defense response to bacterium
GO:0050726 IEA positive regulation of interleukin-1 alpha biosynthetic process
GO:0051770 IEA positive regulation of nitric-oxide synthase biosynthetic process
GO:0060326 IEA cell chemotaxis
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071223 IEA cellular response to lipoteichoic acid
GO:0071310 IEA cellular response to organic substance
GO:2000406 IDA positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026166 Ccl20 chemokine (C-C motif) ligand 20 protein_coding Mus_musculus

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