C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-C motif) ligand 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358813 CCL20-004 ENSG00000115009 9606 + 2:227813854-227817534 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverLungOvaryPlacentaENST00000358813
Transcript ID Adrenal Colon Kidney Liver Lung Ovary Placenta
ENST00000358813 2.056±0.00 0.431±0.00 1.677±0.00 0.245±0.07 10.247±8.07 14.294±12.75 0.504±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0001 CGP 2:227813842-227924344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 IEA cytokine activity
GO:0005515 IPI protein binding
GO:0005576 TAS:IEA extracellular region
GO:0005615 IEA extracellular space
GO:0006935 TAS chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0008009 IEA chemokine activity
GO:0042060 IEA wound healing
GO:0042742 IEA defense response to bacterium
GO:0050726 IEA positive regulation of interleukin-1 alpha biosynthetic process
GO:0051770 IEA positive regulation of nitric-oxide synthase biosynthetic process
GO:0060326 IEA cell chemotaxis
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071223 IEA cellular response to lipoteichoic acid
GO:0071310 IEA cellular response to organic substance
GO:2000406 IDA positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113437 Ccl20-001 protein_coding Mus_musculus 0 318
ENSMUST00000186832 Ccl20-003 protein_coding Mus_musculus 0 298
ENSMUST00000027351 Ccl20-002 protein_coding Mus_musculus 0 209

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