C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chemokine (C-C motif) ligand 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409189 CCL20-001 ENSG00000115009 9606 + 2:227813842-227817564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungOvaryPlacentaTestisENST00000409189
Transcript ID Adipose Adrenal Brain Breast Colon Lung Ovary Placenta Testis
ENST00000409189 0.115±0.00 0.367±0.00 0.059±0.00 1.146±0.00 0.971±0.00 4.854±2.97 16.612±3.29 0.293±0.00 0.254±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0001 CGP 2:227813842-227924344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 TAS:IEA extracellular region
GO:0005615 IEA extracellular space
GO:0006935 TAS chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0007165 TAS signal transduction
GO:0007267 TAS cell-cell signaling
GO:0008009 IEA chemokine activity
GO:0042742 IEA defense response to bacterium
GO:0060326 IEA cell chemotaxis
GO:2000406 IDA positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186832 Ccl20-003 protein_coding Mus_musculus 0 329
ENSMUST00000113437 Ccl20-001 protein_coding Mus_musculus 0 316
ENSMUST00000027351 Ccl20-002 protein_coding Mus_musculus 0 226

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