C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chemokine (C-C motif) ligand 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026166 Ccl20 10090 + 1:83116766-83119167 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027351 Ccl20-002 83116766-83119166 protein_coding
  ENSMUST00000113437 Ccl20-001 83116774-83119167 protein_coding
  ENSMUST00000186832 Ccl20-003 83116793-83119167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027351ENSMUST00000113437ENSMUST00000186832
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027351 N/A N/A N/A 0.951±0.00 N/A 0.050±0.00 0.011±0.00 N/A N/A N/A N/A 0.050±0.00
ENSMUST00000113437 N/A 0.022±0.01 0.221±0.04 8.644±1.05 0.108±0.05 0.121±0.03 0.162±0.01 0.364±0.15 N/A N/A N/A N/A
ENSMUST00000186832 0.038±0.00 0.012±0.00 N/A N/A N/A N/A 0.056±0.01 N/A 0.095±0.00 0.043±0.00 0.031±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076S CIL_00076S_0002 CGP 1:83116766-83210574

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005125 IDA cytokine activity
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0006935 IEA chemotaxis
GO:0006954 IEA inflammatory response
GO:0006955 IEA immune response
GO:0008009 IEA chemokine activity
GO:0042060 IEA wound healing
GO:0050726 IEA positive regulation of interleukin-1 alpha biosynthetic process
GO:0051770 IEA positive regulation of nitric-oxide synthase biosynthetic process
GO:0060326 IEA cell chemotaxis
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071223 IEA cellular response to lipoteichoic acid
GO:0071310 IEA cellular response to organic substance
GO:2000406 ISO positive regulation of T cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000115009 CCL20 chemokine (C-C motif) ligand 20 protein_coding Homo_sapiens

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