C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115234 SNX17 9606 + 2:27370496-27377533 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000233575 SNX17-001 27370522-27377128 protein_coding
  ENST00000427123 SNX17-003 27370628-27377123 nonsense_mediated_decay
  ENST00000440760 SNX17-002 27370617-27377127 nonsense_mediated_decay
  ENST00000453453 SNX17-005 27370665-27377128 nonsense_mediated_decay
  ENST00000464279 SNX17-008 27370644-27373439 retained_intron
  ENST00000484886 SNX17-006 27370615-27371644 retained_intron
  ENST00000489402 SNX17-007 27370646-27373129 retained_intron
  ENST00000493711 SNX17-009 27374408-27375597 retained_intron
  ENST00000494893 SNX17-004 27370620-27375521 retained_intron
  ENST00000537606 SNX17-201 27370496-27377533 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233575ENST00000427123ENST00000440760ENST00000453453
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233575 28.208±0.00 49.066±0.00 3.402±0.00 21.966±11.74 20.861±14.47 32.356±0.00 15.255±12.81 30.170±20.69 19.814±12.42 18.499±15.01 18.182±0.00 44.389±31.90 72.197±16.83 27.247±0.60
ENST00000427123 N/A N/A 1.907±0.00 N/A N/A N/A N/A N/A 1.893±0.00 1.762±0.00 5.498±0.00 N/A N/A N/A
ENST00000440760 N/A N/A N/A N/A N/A 5.228±0.00 0.892±0.00 N/A N/A N/A 3.772±0.00 2.372±0.00 N/A N/A
ENST00000453453 N/A 39.781±0.00 N/A 15.416±0.00 N/A 14.690±0.00 N/A N/A 11.154±0.00 10.321±0.00 0.972±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000133 CIL_000133_0001 CGP 2:27364352-27377533
CIL_0001DJ CIL_0001DJ_0001 CGP 2:27370496-27380790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 NAS receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0006707 IC cholesterol catabolic process
GO:0006886 NAS intracellular protein transport
GO:0006898 IEA receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0008022 IPI protein C-terminus binding
GO:0010008 IDA endosome membrane
GO:0016020 NAS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 NAS endosomal transport
GO:0030100 NAS regulation of endocytosis
GO:0035091 IDA:IEA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0050750 IDA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091418 snx17 sorting nexin 17 protein_coding Danio_rerio
ENSMUSG00000029146 Snx17 sorting nexin 17 protein_coding Mus_musculus

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