C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029146 Snx17 10090 + 5:31193227-31198900 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031029 Snx17-001 31193227-31198900 protein_coding
  ENSMUST00000125603 Snx17-003 31193335-31198900 nonsense_mediated_decay
  ENSMUST00000129873 Snx17-008 31195842-31197710 retained_intron
  ENSMUST00000132471 Snx17-006 31193306-31197056 protein_coding
  ENSMUST00000133711 Snx17-005 31193242-31195434 protein_coding
  ENSMUST00000138986 Snx17-004 31193306-31198899 retained_intron
  ENSMUST00000147145 Snx17-002 31193294-31198894 nonsense_mediated_decay
  ENSMUST00000153069 Snx17-007 31194843-31196434 retained_intron
  ENSMUST00000154815 Snx17-009 31196050-31198144 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031029ENSMUST00000125603ENSMUST00000132471ENSMUST00000147145
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031029 55.495±5.62 45.877±3.77 57.249±4.52 51.126±12.48 38.892±9.57 44.005±4.91 28.237±2.62 47.670±2.19 18.308±9.32 54.154±5.79 14.145±1.67 48.799±18.07 36.849±14.87 13.228±1.35
ENSMUST00000125603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.368±0.00 11.914±0.00 N/A
ENSMUST00000132471 N/A N/A N/A 30.405±0.00 N/A N/A N/A N/A N/A N/A N/A 24.400±0.00 36.285±10.24 N/A
ENSMUST00000147145 N/A 26.530±6.11 N/A N/A 16.100±0.05 14.450±2.77 N/A N/A 7.102±0.00 19.510±0.00 N/A 27.321±13.33 10.657±2.32 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DH CIL_0001DH_0002 CGP 5:31156005-31193430
CIL_000133 CIL_000133_0002 CGP 5:31187558-31198900
CIL_0001DJ CIL_0001DJ_0002 CGP 5:31193227-31202303

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IPI endosome
GO:0005769 IEA early endosome
GO:0005794 IEA Golgi apparatus
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0006898 IDA receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0008022 IEA protein C-terminus binding
GO:0010008 ISO endosome membrane
GO:0015031 IEA protein transport
GO:0016023 ISS cytoplasmic membrane-bounded vesicle
GO:0035091 ISS phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 ISO protein complex
GO:0050750 IEA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091418 snx17 sorting nexin 17 protein_coding Danio_rerio
ENSG00000115234 SNX17 sorting nexin 17 protein_coding Homo_sapiens

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