C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000233575 SNX17-001 ENSG00000115234 9606 + 2:27370522-27377128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000233575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000233575 28.208±0.00 49.066±0.00 3.402±0.00 21.966±11.74 20.861±14.47 32.356±0.00 15.255±12.81 30.170±20.69 19.814±12.42 18.499±15.01 18.182±0.00 44.389±31.90 72.197±16.83 27.247±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000133 CIL_000133_0001 CGP 2:27364352-27377533
CIL_0001DJ CIL_0001DJ_0001 CGP 2:27370496-27380790

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 NAS receptor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005768 IDA endosome
GO:0005769 IDA early endosome
GO:0005794 IDA Golgi apparatus
GO:0005829 IDA cytosol
GO:0006707 IC cholesterol catabolic process
GO:0006886 NAS intracellular protein transport
GO:0006898 IEA receptor-mediated endocytosis
GO:0007165 IEA signal transduction
GO:0008022 IPI protein C-terminus binding
GO:0010008 IDA endosome membrane
GO:0016020 NAS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016197 NAS endosomal transport
GO:0030100 NAS regulation of endocytosis
GO:0035091 IDA:IEA phosphatidylinositol binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043234 IDA protein complex
GO:0050750 IDA low-density lipoprotein particle receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031029 Snx17-001 protein_coding Mus_musculus 0 2239
ENSMUST00000147145 Snx17-002 nonsense_mediated_decay Mus_musculus 0 1775
ENSMUST00000125603 Snx17-003 nonsense_mediated_decay Mus_musculus 0 1192
ENSMUST00000138986 Snx17-004 retained_intron Mus_musculus 0 1024
ENSMUST00000154815 Snx17-009 processed_transcript Mus_musculus 0 1005
ENSMUST00000132471 Snx17-006 protein_coding Mus_musculus 0 979
ENSMUST00000129873 Snx17-008 retained_intron Mus_musculus 0 713
ENSMUST00000153069 Snx17-007 retained_intron Mus_musculus 0 436
ENSMUST00000133711 Snx17-005 protein_coding Mus_musculus 0 207

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