C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000453453 SNX17-005 ENSG00000115234 9606 + 2:27370665-27377128 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungMuscleENST00000453453
Transcript ID Adrenal Brain Colon Liver Lung Muscle
ENST00000453453 39.781±0.00 15.416±0.00 14.690±0.00 11.154±0.00 10.321±0.00 0.972±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000133 CIL_000133_0001 CGP 2:27364352-27377533
CIL_0001DJ CIL_0001DJ_0001 CGP 2:27370496-27380790

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125603 Snx17-003 nonsense_mediated_decay Mus_musculus 0 1768
ENSMUST00000147145 Snx17-002 nonsense_mediated_decay Mus_musculus 0 1192
ENSMUST00000031029 Snx17-001 protein_coding Mus_musculus 0 1192
ENSMUST00000154815 Snx17-009 processed_transcript Mus_musculus 0 767
ENSMUST00000138986 Snx17-004 retained_intron Mus_musculus 0 652
ENSMUST00000129873 Snx17-008 retained_intron Mus_musculus 0 475
ENSMUST00000132471 Snx17-006 protein_coding Mus_musculus 0 466
ENSMUST00000153069 Snx17-007 retained_intron Mus_musculus 0 348

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