C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) polymerase gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000115421 PAPOLG 9606 + 2:60756230-60802085 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000238714 PAPOLG-001 60756230-60798963 protein_coding
  ENST00000412217 PAPOLG-005 60781975-60802085 protein_coding
  ENST00000414060 PAPOLG-003 60756266-60798466 nonsense_mediated_decay
  ENST00000453839 PAPOLG-004 60760135-60798466 nonsense_mediated_decay
  ENST00000470208 PAPOLG-007 60791481-60794004 retained_intron
  ENST00000483370 PAPOLG-008 60779554-60783193 processed_transcript
  ENST00000496283 PAPOLG-002 60756253-60798468 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000238714ENST00000412217ENST00000414060ENST00000453839ENST00000496283
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000238714 N/A 0.617±0.00 0.515±0.00 0.952±0.00 0.699±0.34 1.154±0.15 0.676±0.02 N/A 2.043±0.00 0.771±0.00 0.381±0.00 1.297±0.34 0.693±0.17 1.688±0.78
ENST00000412217 N/A 0.752±0.00 0.116±0.00 0.933±0.00 N/A 0.382±0.00 0.462±0.00 0.413±0.00 0.227±0.00 0.297±0.00 0.302±0.00 0.726±0.00 0.275±0.06 N/A
ENST00000414060 1.008±0.00 0.680±0.00 N/A 0.860±0.05 0.918±0.00 1.583±0.00 0.962±0.00 0.849±0.00 0.602±0.00 1.618±0.00 0.606±0.13 1.458±0.29 0.789±0.36 3.751±0.54
ENST00000453839 0.676±0.00 0.523±0.00 N/A N/A N/A N/A N/A 0.839±0.00 N/A N/A N/A N/A 0.352±0.00 N/A
ENST00000496283 N/A N/A N/A N/A N/A N/A N/A 0.302±0.00 N/A 0.778±0.00 N/A 0.785±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GM CIL_0008GM_0001 VISTA 2:60234269-60835938
CIL_0009DA CIL_0009DA_0001 VISTA 2:60267677-60869129
CIL_0008PG CIL_0008PG_0001 VISTA 2:60327921-60929753

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004652 IEA:IBA polynucleotide adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005634 IBA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006378 IBA mRNA polyadenylation
GO:0016020 IDA membrane
GO:0016779 IEA nucleotidyltransferase activity
GO:0031123 IEA RNA 3'-end processing
GO:0043631 IEA:IDA RNA polyadenylation
GO:0046872 IDA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012141 papolg poly(A) polymerase gamma protein_coding Danio_rerio
ENSMUSG00000020273 Papolg poly(A) polymerase gamma protein_coding Mus_musculus

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