C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(A) polymerase gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000412217 PAPOLG-005 ENSG00000115421 9606 + 2:60781975-60802085 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000412217
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000412217 0.752±0.00 0.116±0.00 0.933±0.00 0.382±0.00 0.462±0.00 0.413±0.00 0.227±0.00 0.297±0.00 0.302±0.00 0.726±0.00 0.275±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GM CIL_0008GM_0001 VISTA 2:60234269-60835938
CIL_0009DA CIL_0009DA_0001 VISTA 2:60267677-60869129
CIL_0008PG CIL_0008PG_0001 VISTA 2:60327921-60929753

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004652 IBA:IEA polynucleotide adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005634 IBA:IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006378 IBA mRNA polyadenylation
GO:0016020 IDA membrane
GO:0016779 IEA nucleotidyltransferase activity
GO:0031123 IEA RNA 3'-end processing
GO:0043631 IDA:IEA RNA polyadenylation
GO:0046872 IDA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020513 Papolg-001 protein_coding Mus_musculus 0 1498
ENSMUST00000150711 Papolg-004 processed_transcript Mus_musculus 0 562
ENSMUST00000145013 Papolg-003 protein_coding Mus_musculus 0 547
ENSMUST00000102863 Papolg-002 protein_coding Mus_musculus 0 457
ENSMUST00000111336 Sdhc-001 protein_coding Mus_musculus 0.00003 57

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