C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008GM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs957 VISTA 9606 2:60234269-60835938
GeneTranscriptPositionBiotype
ENSG00000115421 (PAPOLG)
poly(A) polymerase gamma 		ENST00000238714 (PAPOLG-001) 60756230-60798963 protein_coding
ENST00000412217 (PAPOLG-005) 60781975-60802085 protein_coding
ENST00000414060 (PAPOLG-003) 60756266-60798466 nonsense_mediated_decay
ENST00000453839 (PAPOLG-004) 60760135-60798466 nonsense_mediated_decay
ENST00000470208 (PAPOLG-007) 60791481-60794004 retained_intron
ENST00000483370 (PAPOLG-008) 60779554-60783193 processed_transcript
ENST00000496283 (PAPOLG-002) 60756253-60798468 retained_intron
ENSG00000119866 (BCL11A)
B-cell CLL/lymphoma 11A (zinc finger protein) 		ENST00000335712 (BCL11A-001) 60457198-60553498 protein_coding
ENST00000356842 (BCL11A-002) 60451167-60553499 protein_coding
ENST00000358510 (BCL11A-006) 60460274-60553431 protein_coding
ENST00000359629 (BCL11A-003) 60451167-60553567 protein_coding
ENST00000409351 (BCL11A-004) 60541882-60553500 processed_transcript
ENST00000477659 (BCL11A-008) 60459820-60536206 processed_transcript
ENST00000479026 (BCL11A-013) 60452154-60460455 processed_transcript
ENST00000489183 (BCL11A-011) 60544230-60546180 processed_transcript
ENST00000489516 (BCL11A-007) 60451781-60550914 processed_transcript
ENST00000492272 (BCL11A-010) 60452577-60528535 processed_transcript
ENSG00000200807 (RNU1-32P)
RNA, U1 small nuclear 32, pseudogene 		ENST00000363937 (RNU1-32P-201) 60384605-60384763 snRNA
ENSG00000213495 (RP11-416L21.1)
 ENST00000424037 (RP11-416L21.1-001) 60711484-60711920 processed_pseudogene
ENSG00000223929 (AC007381.2)
 ENST00000441598 (AC007381.2-002) 60359720-60383036 lincRNA
ENST00000453476 (AC007381.2-001) 60359216-60391375 lincRNA
ENSG00000228414 (LINC01185)
long intergenic non-protein coding RNA 1185 		ENST00000439412 (LINC01185-002) 60825132-60881314 lincRNA
ENST00000452343 (LINC01185-001) 60847760-60881314 lincRNA
ENSG00000228590 (AC007381.3)
 ENST00000457668 (AC007381.3-001) 60350595-60353016 lincRNA
ENSG00000233953 (AC009970.1)
 ENST00000444873 (AC009970.1-001) 60495686-60499964 antisense
ENSG00000241524 (RN7SL632P)
RNA, 7SL, cytoplasmic 632, pseudogene 		ENST00000489734 (RN7SL632P-201) 60831664-60831929 misc_RNA
ENSG00000242158 (RN7SL361P)
RNA, 7SL, cytoplasmic 361, pseudogene 		ENST00000470785 (RN7SL361P-201) 60640705-60641002 misc_RNA
ENSG00000271134 (RP11-416L21.2)
 ENST00000604586 (RP11-416L21.2-001) 60682873-60683244 processed_pseudogene
ENSG00000271707 (ATP1B3P1)
ATPase, Na+/K+ transporting, beta 3 pseudogene 		ENST00000605365 (ATP1B3P1-001) 60734895-60735715 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0008GM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs957 VISTA 10090 11:23795054-24396665
GeneTranscriptPositionBiotype
ENSMUSG00000000861 (Bcl11a)
B cell CLL/lymphoma 11A (zinc finger protein) 		ENSMUST00000000881 (Bcl11a-003) 24078056-24173194 protein_coding
ENSMUST00000109514 (Bcl11a-006) 24078173-24168429 protein_coding
ENSMUST00000109516 (Bcl11a-005) 24078117-24174123 protein_coding
ENSMUST00000118955 (Bcl11a-001) 24080670-24173558 protein_coding
ENSMUST00000124148 (Bcl11a-004) 24078147-24090906 retained_intron
ENSMUST00000127494 (Bcl11a-002) 24142379-24163291 processed_transcript
ENSMUSG00000020273 (Papolg)
poly(A) polymerase gamma 		ENSMUST00000020513 (Papolg-001) 23862646-23895253 protein_coding
ENSMUST00000102863 (Papolg-002) 23870056-23895236 protein_coding
ENSMUST00000145013 (Papolg-003) 23865244-23868470 protein_coding
ENSMUST00000150711 (Papolg-004) 23866411-23891904 processed_transcript
ENSMUSG00000055010 (A830031A19Rik)
RIKEN cDNA A830031A19 gene 		ENSMUST00000068360 (A830031A19Rik-001) 24048955-24075054 protein_coding
ENSMUSG00000085167 (Gm12063)
predicted gene 12063 		ENSMUST00000148087 (Gm12063-001) 24076559-24077367 lincRNA
ENSMUSG00000085516 (4930538E20Rik)
RIKEN cDNA 4930538E20 gene 		ENSMUST00000131383 (4930538E20Rik-002) 24160528-24172824 antisense
ENSMUST00000146717 (4930538E20Rik-001) 24166873-24172781 antisense
ENSMUSG00000085579 (Gm12066)
predicted gene 12066 		ENSMUST00000123592 (Gm12066-001) 24201418-24217601 lincRNA
ENSMUSG00000086117 (Gm12065)
predicted gene 12065 		ENSMUST00000149592 (Gm12065-001) 24198737-24202624 lincRNA
ENSMUSG00000086612 (Gm12064)
predicted gene 12064 		ENSMUST00000133819 (Gm12064-001) 24099688-24115405 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008GM_0001ENSG00000115421ENST00000238714ENST00000412217ENST00000414060ENST00000453839ENST00000496283ENSG00000119866ENST00000335712ENST00000356842ENST00000358510ENST00000359629ENST00000409351ENST00000477659ENST00000479026ENST00000489516ENST00000492272ENSG00000200807ENST00000363937ENSG00000213495ENST00000424037ENSG00000223929ENST00000441598ENST00000453476ENSG00000228414ENST00000439412ENST00000452343ENSG00000228590ENST00000457668ENSG00000233953ENST00000444873ENSG00000241524ENST00000489734ENSG00000242158ENST00000470785ENSG00000271134ENST00000604586ENSG00000271707ENST00000605365CIL_0008GM_0002ENSMUSG00000000861ENSMUST00000000881ENSMUST00000109514ENSMUST00000118955ENSMUST00000124148ENSMUST00000127494ENSMUSG00000020273ENSMUST00000020513ENSMUST00000102863ENSMUST00000145013ENSMUST00000150711ENSMUSG00000055010ENSMUST00000068360ENSMUSG00000085167ENSMUST00000148087ENSMUSG00000085516ENSMUST00000131383ENSMUST00000146717ENSMUSG00000085579ENSMUST00000123592ENSMUSG00000086117ENSMUST00000149592ENSMUSG00000086612ENSMUST00000133819
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115421 ENST00000238714 N/A 0.617±0.00 0.515±0.00 0.952±0.00 0.699±0.34 1.154±0.15 0.676±0.02 N/A 2.043±0.00 0.771±0.00 0.381±0.00 1.297±0.34 0.693±0.17 1.688±0.78
ENST00000412217 N/A 0.752±0.00 0.116±0.00 0.933±0.00 N/A 0.382±0.00 0.462±0.00 0.413±0.00 0.227±0.00 0.297±0.00 0.302±0.00 0.726±0.00 0.275±0.06 N/A
ENST00000414060 1.008±0.00 0.680±0.00 N/A 0.860±0.05 0.918±0.00 1.583±0.00 0.962±0.00 0.849±0.00 0.602±0.00 1.618±0.00 0.606±0.13 1.458±0.29 0.789±0.36 3.751±0.54
ENST00000453839 0.676±0.00 0.523±0.00 N/A N/A N/A N/A N/A 0.839±0.00 N/A N/A N/A N/A 0.352±0.00 N/A
ENST00000470208 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496283 N/A N/A N/A N/A N/A N/A N/A 0.302±0.00 N/A 0.778±0.00 N/A 0.785±0.00 N/A N/A
ENSG00000119866 ENST00000335712 N/A N/A 0.013±0.00 1.049±0.00 N/A 0.665±0.00 N/A 0.057±0.00 N/A N/A N/A 0.670±0.00 0.033±0.01 0.142±0.00
ENST00000356842 N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358510 N/A N/A 0.149±0.00 4.179±0.00 0.495±0.00 1.236±0.00 0.829±0.00 N/A N/A 0.456±0.00 0.022±0.00 2.567±0.00 0.079±0.01 0.165±0.00
ENST00000359629 N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 0.004±0.00 N/A 0.009±0.00 N/A N/A N/A
ENST00000409351 0.144±0.00 N/A 0.498±0.00 5.777±0.00 N/A N/A N/A N/A 1.419±0.00 N/A N/A N/A N/A N/A
ENST00000477659 N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A 0.024±0.00 0.301±0.01
ENST00000479026 N/A 10.655±0.00 N/A N/A 1.317±0.00 4.550±0.00 N/A 0.170±0.00 N/A 1.834±0.00 N/A 2.189±0.00 0.150±0.06 1.332±0.49
ENST00000489183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489516 N/A N/A N/A 1.305±0.00 N/A 1.640±0.00 1.118±0.00 N/A N/A N/A N/A 0.169±0.00 0.059±0.02 N/A
ENST00000492272 N/A N/A N/A 4.265±0.00 N/A N/A N/A N/A N/A N/A N/A 5.919±0.00 0.311±0.00 N/A
ENSG00000200807 ENST00000363937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00
ENSG00000213495 ENST00000424037 0.034±0.00 0.071±0.00 N/A 0.037±0.00 0.036±0.00 0.067±0.00 N/A N/A 0.031±0.00 0.132±0.00 0.062±0.00 N/A N/A N/A
ENSG00000223929 ENST00000441598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.101±0.01
ENST00000453476 N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A 0.078±0.00 N/A
ENSG00000228414 ENST00000439412 N/A 0.122±0.00 N/A 0.227±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.452±0.19
ENST00000452343 0.009±0.00 0.018±0.00 N/A 0.031±0.00 0.212±0.00 N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A 0.022±0.00
ENSG00000228590 ENST00000457668 N/A 0.167±0.00 N/A N/A N/A N/A 0.061±0.02 N/A N/A 0.293±0.00 N/A N/A N/A N/A
ENSG00000233953 ENST00000444873 N/A N/A N/A 0.099±0.00 0.142±0.00 N/A N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A
ENSG00000241524 ENST00000489734 N/A N/A N/A N/A N/A 1.596±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242158 ENST00000470785 0.067±0.00 0.144±0.00 N/A 0.162±0.00 0.229±0.00 0.417±0.00 0.134±0.00 0.828±0.00 0.263±0.00 N/A N/A 1.006±0.00 N/A 0.132±0.00
ENSG00000271134 ENST00000604586 0.356±0.00 0.252±0.00 N/A 0.146±0.00 0.069±0.00 N/A N/A N/A N/A 0.698±0.00 N/A 0.210±0.06 0.172±0.00 1.227±0.00
ENSG00000271707 ENST00000605365 0.014±0.00 N/A N/A 0.029±0.00 0.042±0.00 0.013±0.00 N/A 0.028±0.00 N/A 0.247±0.22 0.013±0.00 N/A N/A 0.087±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000861 ENSMUST00000000881 0.055±0.02 0.261±0.10 0.306±0.07 12.993±1.51 1.433±0.83 0.566±0.18 0.195±0.05 0.122±0.08 2.796±2.12 0.267±0.05 0.354±0.00 1.214±0.43 0.102±0.05 1.595±0.37
ENSMUST00000109514 0.010±0.00 0.325±0.09 0.076±0.01 8.852±4.60 1.290±0.15 0.371±0.12 0.052±0.01 0.057±0.02 1.695±1.72 0.112±0.02 0.081±0.13 1.017±0.46 0.060±0.05 N/A
ENSMUST00000109516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000118955 0.024±0.00 0.300±0.07 N/A 11.734±0.00 0.870±0.00 0.604±0.12 0.205±0.06 0.100±0.01 4.143±2.14 0.388±0.00 N/A 1.359±0.00 0.050±0.00 N/A
ENSMUST00000124148 0.049±0.04 N/A 0.119±0.02 4.019±0.78 0.530±0.15 0.172±0.00 0.071±0.02 0.035±0.01 1.129±0.93 0.129±0.03 0.069±0.00 0.390±0.00 0.026±0.02 N/A
ENSMUST00000127494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.130±0.00 N/A
ENSMUSG00000020273 ENSMUST00000020513 1.467±0.47 N/A 3.102±0.32 7.379±1.12 2.068±0.28 1.591±0.45 1.368±0.48 1.406±0.36 1.791±0.60 2.563±0.57 0.961±0.22 3.582±0.62 2.634±0.30 2.740±1.01
ENSMUST00000102863 N/A N/A N/A 1.464±0.00 N/A N/A N/A N/A N/A N/A N/A 2.759±0.00 1.181±0.30 3.211±0.00
ENSMUST00000145013 N/A 0.305±0.00 N/A N/A 1.266±0.04 0.790±0.10 N/A 0.824±0.29 0.370±0.05 0.819±0.00 N/A 1.227±0.49 N/A N/A
ENSMUST00000150711 N/A N/A N/A N/A 1.442±0.70 N/A 0.694±0.03 0.903±0.11 0.423±0.00 1.487±0.13 N/A N/A N/A N/A
ENSMUSG00000055010 ENSMUST00000068360 N/A N/A N/A 0.207±0.11 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085167 ENSMUST00000148087 0.046±0.00 0.076±0.02 0.038±0.00 3.131±2.66 0.259±0.10 0.056±0.01 N/A N/A 0.357±0.19 0.050±0.00 N/A 0.142±0.02 0.075±0.00 0.054±0.00
ENSMUSG00000085516 ENSMUST00000131383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.835±1.11
ENSMUST00000146717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.00 31.532±0.00
ENSMUSG00000085579 ENSMUST00000123592 N/A N/A N/A N/A 0.230±0.09 N/A N/A N/A 0.090±0.07 N/A N/A 0.271±0.07 0.047±0.00 0.200±0.02
ENSMUSG00000086117 ENSMUST00000149592 0.077±0.00 N/A N/A N/A 0.134±0.07 0.270±0.09 N/A N/A 0.021±0.01 N/A N/A 0.679±0.19 N/A N/A
ENSMUSG00000086612 ENSMUST00000133819 N/A N/A N/A 0.146±0.00 N/A N/A N/A N/A 0.081±0.00 0.079±0.00 N/A 0.156±0.04 N/A 0.597±0.23

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