C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly(A) polymerase gamma
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020273 Papolg 10090 - 11:23862646-23895253 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000020513 Papolg-001 23862646-23895253 protein_coding
  ENSMUST00000102863 Papolg-002 23870056-23895236 protein_coding
  ENSMUST00000145013 Papolg-003 23865244-23868470 protein_coding
  ENSMUST00000150711 Papolg-004 23866411-23891904 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020513ENSMUST00000102863ENSMUST00000145013ENSMUST00000150711
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020513 1.467±0.47 N/A 3.102±0.32 7.379±1.12 2.068±0.28 1.591±0.45 1.368±0.48 1.406±0.36 1.791±0.60 2.563±0.57 0.961±0.22 3.582±0.62 2.634±0.30 2.740±1.01
ENSMUST00000102863 N/A N/A N/A 1.464±0.00 N/A N/A N/A N/A N/A N/A N/A 2.759±0.00 1.181±0.30 3.211±0.00
ENSMUST00000145013 N/A 0.305±0.00 N/A N/A 1.266±0.04 0.790±0.10 N/A 0.824±0.29 0.370±0.05 0.819±0.00 N/A 1.227±0.49 N/A N/A
ENSMUST00000150711 N/A N/A N/A N/A 1.442±0.70 N/A 0.694±0.03 0.903±0.11 0.423±0.00 1.487±0.13 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PG CIL_0008PG_0002 VISTA 11:23715166-24317101
CIL_0004OR CIL_0004OR_0002 CGP 11:23741514-23895253
CIL_0009DA CIL_0009DA_0002 VISTA 11:23762086-24363576
CIL_0008GM CIL_0008GM_0002 VISTA 11:23795054-24396665

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004652 IBA:ISS polynucleotide adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005634 IBA:ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006378 IBA mRNA polyadenylation
GO:0016020 IEA membrane
GO:0043631 ISS RNA polyadenylation
GO:0046872 ISS metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012141 papolg poly(A) polymerase gamma protein_coding Danio_rerio
ENSG00000115421 PAPOLG poly(A) polymerase gamma protein_coding Homo_sapiens

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