C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stathmin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000117632 STMN1 9606 - 1:25884181-25906991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000357865 STMN1-003 25900595-25906991 protein_coding
  ENST00000374291 STMN1-005 25900741-25905128 protein_coding
  ENST00000399728 STMN1-201 25900118-25906153 protein_coding
  ENST00000426559 STMN1-008 25885440-25906466 protein_coding
  ENST00000446334 STMN1-004 25901612-25905489 protein_coding
  ENST00000455785 STMN1-001 25900102-25906466 protein_coding
  ENST00000465604 STMN1-002 25900568-25906417 processed_transcript
  ENST00000485226 STMN1-007 25901407-25903813 processed_transcript
  ENST00000513116 STMN1-009 25884181-25892607 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357865ENST00000374291ENST00000455785ENST00000465604ENST00000485226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357865 N/A N/A N/A N/A 4.770±0.00 1.499±0.00 6.226±0.00 5.847±5.29 N/A 5.847±0.00 1.322±0.62 94.800±51.40 65.407±26.49 104.283±72.82
ENST00000374291 5.575±0.00 25.857±0.00 5.202±0.00 253.398±135.86 12.107±5.57 22.010±17.87 4.238±3.07 9.362±7.03 2.059±0.56 13.854±10.49 1.778±0.96 86.560±81.63 58.813±39.41 181.006±119.66
ENST00000455785 7.162±0.00 16.444±0.00 N/A 131.258±49.03 6.439±1.40 10.026±6.08 1.927±1.38 5.294±4.38 0.666±0.00 5.170±2.89 1.049±0.72 32.207±25.93 14.725±2.01 59.356±0.00
ENST00000465604 N/A N/A N/A N/A N/A N/A N/A 0.322±0.00 0.152±0.00 N/A N/A 1.219±0.00 N/A N/A
ENST00000485226 N/A N/A N/A N/A N/A N/A N/A N/A 1.136±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003Q2 CIL_0003Q2_0002 CGP 1:25861210-25906991

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005515 IEA protein binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005874 IEA microtubule
GO:0007019 IDA microtubule depolymerization
GO:0007052 IDA mitotic spindle organization
GO:0007165 NAS signal transduction
GO:0007409 IEA axonogenesis
GO:0007420 IEA brain development
GO:0009615 IEP response to virus
GO:0015631 IDA tubulin binding
GO:0016020 IEA membrane
GO:0031110 IEA regulation of microtubule polymerization or depolymerization
GO:0031115 IEA negative regulation of microtubule polymerization
GO:0035556 TAS intracellular signal transduction
GO:0051272 IEA positive regulation of cellular component movement
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004169 stmn1a stathmin 1a protein_coding Danio_rerio
ENSDARG00000033655 stmn1b stathmin 1b protein_coding Danio_rerio
ENSMUSG00000028832 Stmn1 stathmin 1 protein_coding Mus_musculus

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